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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PVSVDGETLTVEAVRRVAEERATVDVPAESIAKAQKSREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLVR
SHSAGVGPLFAEDEARAIVAARLNTLAKGHSAVRPIILERLAQYLNEGITPAIPEIGSLGGDLAPLSHVASTLIGEGYVL
RDGRPVETAQVLAERGIEPLELRFKEGLALINGTSGMTGLGSLVVGRALEQAQQAEIVTALLIEAVRGSTSPFLAEGHDI
ARPHEGQIDTAANMRALMRGSGLTVEHADLRRELQKDKEAGKDVQRSEIYLQKAYSLRAIPQVVGAVRDTLYHARHKLRI
ELNSANDNPLFFEGKEIFHGANFHGQPIAFAMDFVTIALTQLGVLAERQINRVLNRHLSYGLPEFLVSGDPGLHSGFAGA
QYPATALVAENRTIGPASTQSVPSNGDNQDVVSMGLISARNARRVLSNNNKILAVEYLAAAQAVDISGRFDGLSPAAKAT
YEAVRRLVPTLGVDRYMADDIELVADALSRGEFLRAIARETDIQLR

The query sequence (length=526) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kdz:A 527 526 0.9981 0.9962 0.9981 0.0 3kdz:B, 2qve:A, 2qve:B, 2rjr:A, 2rjs:A, 2rjs:B
2 3unv:A 514 505 0.3650 0.3735 0.3802 5.10e-111 3unv:B
3 2o7d:A 515 494 0.3840 0.3922 0.4089 6.50e-99 2o7d:D, 2o7d:B, 2o7d:C, 2o7d:E, 2o7d:H, 2o7d:F, 2o7d:G, 2o7e:A, 2o7e:D, 2o7e:B, 2o7e:C, 2o7e:E, 2o7e:H, 2o7e:F, 2o7e:G
4 1gkm:A 507 511 0.3422 0.3550 0.3523 9.00e-84
5 5ltm:B 537 522 0.3099 0.3035 0.3123 1.81e-63 5ltm:A
6 4c5s:C 642 477 0.2909 0.2383 0.3208 4.07e-55 4c5r:A, 4c5r:B, 4c5r:C, 4c5r:D, 4c5s:A, 4c5s:B, 4c5s:D
7 6f6t:B 677 533 0.3099 0.2408 0.3058 2.11e-52 6f6t:A, 6hqf:A, 6hqf:B
8 6s7q:A 497 512 0.2510 0.2656 0.2578 9.94e-46 6s7q:D, 6s7q:B, 6s7q:C, 6s7q:E, 6s7q:H, 6s7q:F, 6s7q:G
9 6rgs:B 626 436 0.2586 0.2173 0.3119 3.60e-45
10 9eq5:A 511 543 0.2681 0.2759 0.2597 1.88e-36 9eq5:D, 9eq5:B, 9eq5:C
11 8qhp:A 410 154 0.0627 0.0805 0.2143 0.060 8qhp:B
12 7yxa:A 375 70 0.0418 0.0587 0.3143 0.82 7yxa:B
13 5isx:A 529 66 0.0304 0.0302 0.2424 3.7 5isx:B
14 5hzt:A 192 89 0.0437 0.1198 0.2584 7.4 5hzt:K
15 3mbi:A 287 78 0.0361 0.0662 0.2436 8.9 3lpn:A, 3lpn:B, 3lrt:A, 3lrt:B, 3mbi:C, 3mbi:B, 3mbi:D, 3nag:A, 3nag:B
16 7qa8:B 299 54 0.0304 0.0535 0.2963 9.6 7ad3:B, 7ad3:A, 7qa8:A, 7qb9:A, 7qb9:B, 7qbc:A, 7qbc:B, 7qbi:A, 7qbi:B
17 6ly5:B 132 37 0.0285 0.1136 0.4054 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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