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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PVNPEKLLVITVATAETEGYLRFLRSAEFFNYTVRTLGLGGGGQKVRWLKKEMEKYADREDMIIMFVDSYDVILAGSPTE
LLKKFVQSGSRLLFSAESFCWPEWGLAEQYPEVGTGKRFLNSGGFIGFATTIHQIVRQWKYKDDDDDQLFYTRLYLDPGL
REKLSLNLDHKSRIFQNLNGALDEVVLKFDRNRVRIRNVAYDTLPIVVHGNGPTKLQLNYLGNYVPNGWTPEGGCGFCNQ
TLPGGQPPPRVFLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLHNNEVFHEPHIADSWPQLQDHFSAVKLVGPEEALS
PGEARDMAMDLCRQDPECEFYFSLDADAVLTNLQTLRILIEENRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVEL
VQRKRVGVWNVPYISQAYVIRGDTLRMELPQRDVFSGSDTDPDMAFCKSFRDKGIFLHLSNQHEFGRLLATSRYDTEHLH
PDLWQIFDNPVDWKEQYIHENYSRALEGEGIVEQPCPDVYWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSRLAGGYENV
PTVDIHMKQVGYEDQWLQLLRTYVGPMTESLFPGYHTKARAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVALNHKGLDYE
GGGCRFLRYDCVISSPRKGWALLHPGRLTHYHEGLPTTWGTRYIMVSFVDP

The query sequence (length=691) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6fxr:A 700 703 0.9928 0.9800 0.9758 0.0 6fxk:A, 6fxm:A, 6fxt:A, 6fxx:A, 6fxy:A, 8one:A, 6te3:A, 6tec:A, 6tes:A, 6teu:A, 6tex:A, 6tez:A, 6wfv:A
2 6ax6:B 197 210 0.1100 0.3858 0.3619 2.69e-39 6ax6:A, 6ax7:A, 6ax7:B
3 6uqk:A 2054 112 0.0434 0.0146 0.2679 0.20 6uqk:B, 6uqk:C, 6uqk:D
4 6kia:A 442 70 0.0275 0.0430 0.2714 0.29 6kia:B
5 7t3p:A 2066 110 0.0434 0.0145 0.2727 0.70 7t3p:B, 7t3p:C, 7t3p:D
6 7t3r:A 2130 112 0.0434 0.0141 0.2679 0.71 7t3r:B, 7t3r:C, 7t3r:D, 7t3t:A, 7t3t:B, 7t3t:C, 7t3t:D
7 5oql:O 864 62 0.0260 0.0208 0.2903 1.5
8 6rxt:UU 902 62 0.0260 0.0200 0.2903 1.5 6rxu:UU, 6rxv:UU, 6rxx:UU, 6rxy:UU, 6rxz:UU
9 8r2j:B 275 40 0.0203 0.0509 0.3500 2.5 8r2j:A
10 2a5h:B 410 89 0.0333 0.0561 0.2584 3.8 2a5h:A, 2a5h:D, 2a5h:C
11 3ugs:B 208 27 0.0174 0.0577 0.4444 4.4 3ugs:A
12 5m7h:A 420 104 0.0362 0.0595 0.2404 5.5 4dcs:A, 4dct:A, 4dcu:A, 2hjg:A, 5mbs:A, 5x4b:A, 5x4b:B
13 7jil:h 206 28 0.0188 0.0631 0.4643 5.7
14 1v2x:A 191 107 0.0376 0.1361 0.2430 7.1
15 7dt1:A 846 47 0.0217 0.0177 0.3191 7.6 7dt1:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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