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BioLiP
>protein
PVLQIQRIYVKDVSFEAPNLPHIFQQEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAGVFTI
SGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMNRQQAENAE

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ozb:A 144 144 1.0000 1.0000 1.0000 1.75e-106 1ozb:B, 1ozb:C, 1ozb:D
2 5jtm:A 155 143 0.5625 0.5226 0.5664 3.04e-64 5jtm:B, 5jtm:C, 5jtm:D, 5jtp:A, 5jtp:B, 5jtp:C, 5jtp:D
3 3cty:B 305 55 0.1111 0.0525 0.2909 0.31 3cty:A
4 2r9v:A 487 123 0.1944 0.0575 0.2276 1.6
5 5jdo:A 249 30 0.0972 0.0562 0.4667 2.3 5jdo:B
6 8p2f:E 670 72 0.1250 0.0269 0.2500 3.5 8p2g:E, 8p2h:E
7 3hko:A 319 24 0.0833 0.0376 0.5000 4.6
8 8udk:B 369 30 0.0764 0.0298 0.3667 5.6
9 3kd3:A 216 58 0.1111 0.0741 0.2759 6.3 3kd3:B
10 5mtw:C 138 23 0.0764 0.0797 0.4783 7.4 5mtw:A, 5mtw:D, 5mtw:B
11 7v2h:l 606 36 0.0903 0.0215 0.3611 8.2 7vc0:l, 7vy1:l, 7vys:l, 7w0h:l, 7w2l:l, 7w2r:l, 7w2y:l, 7w32:l, 7w4q:l
12 2v5e:A 200 46 0.0903 0.0650 0.2826 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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