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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PVLQIQRIYVKDVSFEAPNLPHIFQQEWKPKLGFDLSTETTQVGDDLYEVVLNISVETTLEDSGDVAFICEVKQAGVFTI
SGLEDVQMAHCLTSQCPNMLFPYARELVSNLVNRGTFPALNLSPVNFDALFVEYMN

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ozb:A 144 136 1.0000 0.9444 1.0000 3.54e-100 1ozb:B, 1ozb:C, 1ozb:D
2 5jtm:A 155 134 0.5735 0.5032 0.5821 5.53e-62 5jtm:B, 5jtm:C, 5jtm:D, 5jtp:A, 5jtp:B, 5jtp:C, 5jtp:D
3 2r9v:A 487 123 0.2059 0.0575 0.2276 1.1
4 5jdo:A 249 32 0.1250 0.0683 0.5312 2.2 5jdo:B
5 3hko:A 319 24 0.0882 0.0376 0.5000 4.1
6 3kd3:A 216 58 0.1176 0.0741 0.2759 4.5 3kd3:B
7 8udk:B 369 30 0.0809 0.0298 0.3667 5.6
8 2v5e:A 200 46 0.0956 0.0650 0.2826 6.7
9 5mtw:C 138 23 0.0809 0.0797 0.4783 8.9 5mtw:A, 5mtw:D, 5mtw:B
10 3c7t:A 259 42 0.1103 0.0579 0.3571 9.6 3c7t:B, 3c7t:C, 3c7t:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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