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BioLiP
>protein
PVLPCHVGDPDMWFADTPAGLEVAKTMCVSCPIRRQCLAAALQRAEPWGVWGGEIFDQGSIVSH

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kim:Z 80 64 0.9688 0.7750 0.9688 9.67e-43 7kif:Z, 7kuf:A, 7kug:A, 7kug:C
2 8dy7:H 85 49 0.2969 0.2235 0.3878 3.72e-09 8dy9:H
3 8cwr:A 85 32 0.2500 0.1882 0.5000 2.65e-05 8cwt:A, 8cwt:C, 8cwt:E, 8cyf:A
4 5oay:A 76 59 0.3125 0.2632 0.3390 6.66e-05 6ono:A, 6ono:C, 6onu:A, 6onu:C, 6onu:E, 6onu:G
5 8d5v:A 84 48 0.2812 0.2143 0.3750 0.006 8d5v:C
6 6sga:DP 212 18 0.1562 0.0472 0.5556 0.89 6hiv:DP, 6hiw:DP, 6hiy:DP, 7pua:DP, 7pub:DP, 6sgb:DP
7 3ray:A 159 55 0.2500 0.1006 0.2909 2.5
8 4abk:A 182 38 0.1719 0.0604 0.2895 3.2 5qht:A, 5qhu:A, 5qhv:A, 5qhw:A, 5qhx:A, 5qhy:A, 5qhz:A, 5qi0:A, 5qi1:A, 5qi2:A, 5qi3:A, 5qi4:A, 5qi5:A, 5qi6:A, 5qi7:A, 5qi8:A, 5qi9:A, 5qia:A
9 8rkq:A 547 53 0.2344 0.0274 0.2830 3.4 4e3x:A, 4e3x:B, 4lh0:A, 4lh0:B, 4lh3:A, 4lh3:B, 7mer:A, 7mer:B, 7mes:A, 7mes:B, 8rkq:D, 8rkr:A, 3v9h:A, 3v9h:B, 3v9h:C, 3v9h:D, 3v9j:A, 3v9j:B, 3v9k:A, 3v9k:B, 3v9l:A, 3v9l:B
10 7of4:C 422 37 0.2031 0.0308 0.3514 3.7 7of2:C, 7of6:C
11 7atm:A 478 29 0.1719 0.0230 0.3793 4.3 7kiv:A, 7kiw:A, 7lc4:A, 7ly1:A, 3pbo:A
12 2cxn:A 557 29 0.1562 0.0180 0.3448 4.9 2cxo:A, 2cxo:B, 2cxp:A, 2cxp:B, 2cxq:A, 2cxq:B, 2cxr:A, 2cxr:B, 2cxs:A, 2cxs:B, 2cxt:A, 2cxt:B, 2cxu:A, 1u0f:A, 1u0g:A, 1u0g:B
13 3p41:A 283 32 0.1875 0.0424 0.3750 5.6 3lsn:A
14 5ad1:A 290 19 0.1406 0.0310 0.4737 5.7 5a1j:A, 5a5d:A, 5a5v:A, 5adv:A, 5adv:B, 5adv:C, 5adw:A, 5adw:B, 5adw:C, 2chu:A, 2chu:B, 5lwh:A, 5oah:A, 5oah:B, 5od5:A, 5od5:C, 5tcy:A, 5tcy:B, 5tcy:C
15 2bjj:X 692 59 0.2344 0.0217 0.2542 6.3 1b0l:A, 1bka:A, 1cb6:A, 1dsn:A, 1eh3:A, 1fck:A, 1h43:A, 1h44:A, 1h45:A, 1hse:A, 7jrd:B, 1lcf:A, 1lct:A, 1lfg:A, 1lfi:A, 1n76:A, 7n88:B, 2pms:A, 2pms:B, 1sqy:A, 1vfd:A, 1vfe:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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