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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PVLNLNDPQAVERYEEFMRQSPYGQVTQDLGWAKVKNNWEPVDVYLEDDQGAIIAAMSMLLGDTPTDKKFAYASKGPVMD
VTDVDLLDRLVDEAVKALDGRAYVLRFDPEVAYSDEFNTTLQDHGYVTRNRNVAAGMHATIQPRLNMVLDLTKFPDAKTT
LDLYPSKTKSKIKRPFRDGVEVHSGNSATELDEFFKTYTTMAERHGITHRPIEYFQRMQAAFDADTMRIFVAEREGKLLS
TGIALKYGRKIWYMYAGSMDGNTYYAPYAVQSEMIQWALDTNTDLYDLGGIESESTDDSLYVFKHVFVKDAPREYIGEID
KVLDPEVYAELV

The query sequence (length=332) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ii9:A 337 333 1.0000 0.9852 0.9970 0.0 3gkr:A, 1ne9:A, 1p4n:A, 1xe4:A, 1xf8:A, 7z5y:A, 7z5z:A, 7z6a:A, 7z6k:A
2 8y9b:B 1607 161 0.1175 0.0243 0.2422 0.39
3 7ml7:A 1216 161 0.1175 0.0321 0.2422 0.43
4 8qeo:A 2146 161 0.1175 0.0182 0.2422 0.45
5 8qen:A 2363 161 0.1175 0.0165 0.2422 0.58 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
6 8eik:C 407 49 0.0512 0.0418 0.3469 3.0
7 1xkq:A 272 76 0.0693 0.0846 0.3026 3.1 1xkq:B, 1xkq:C, 1xkq:D
8 8eii:B 439 49 0.0512 0.0387 0.3469 3.1 8eih:A, 8eih:B, 8eih:C, 8eii:A, 8eii:C, 8eij:A, 8eij:B, 8eik:A, 8eik:B, 6kda:A, 6kda:D, 6kdb:A, 6kdb:D, 6kdl:A, 6kdl:D, 6kdp:A, 6kdp:D, 6kdt:A, 6kdt:D, 7o45:A, 7o45:B, 7o45:C, 6u8p:A, 6u8p:D, 6u8v:A, 6u8v:D, 6u8w:A, 6u8w:D, 6u8x:A, 6u8x:D, 6u90:A, 6u90:D, 6u91:A, 6u91:D, 7v0e:A, 7v0e:B, 7v0e:C, 7v0e:D, 7v0e:E, 7v0e:F, 7v0e:G, 7v0e:H, 7x9d:A, 7x9d:D
9 8bqf:D 215 60 0.0572 0.0884 0.3167 5.0 1ake:A, 1ake:B, 1ank:A, 1ank:B, 7apu:A, 7apu:B, 8bqf:A, 8bqf:B, 8bqf:C, 8bqf:E, 8bqf:F, 8crg:AA, 8crg:BA, 1e4v:A, 1e4v:B, 1e4y:A, 1e4y:B, 2eck:A, 2eck:B, 5eje:A, 5eje:B, 6ham:A, 6hap:A, 3hpq:A, 3hpq:B, 3hpr:A, 3hpr:B, 4jzk:A, 4jzk:B, 8q2b:A, 8q2b:B, 8rj4:A, 8rj4:B, 8rj4:C, 8rj4:D, 8rj6:A, 8rj6:B, 8rj9:A, 8rj9:B, 3x2s:A, 3x2s:B, 4x8l:A, 4x8l:B, 4x8o:A, 4x8o:B
10 2ywc:A 475 30 0.0361 0.0253 0.4000 7.7 2ywc:B, 2ywc:C, 2ywc:D
11 2z1q:B 549 44 0.0452 0.0273 0.3409 9.5 2z1q:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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