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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVP
VKGSRYAPNR

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7f3i:A 93 90 1.0000 0.9677 1.0000 9.59e-62 7f3i:C, 7f3i:E, 7f3j:A, 7f3j:C, 7f3j:E, 7f3j:G, 7f3k:A, 7f3l:A
2 6a6j:A 90 89 0.9000 0.9000 0.9101 1.68e-56 6a6j:C, 6a6l:A, 6ktc:A, 6kug:A, 6lmr:A, 5yts:A, 5ytt:A, 5ytv:A, 5ytx:A
3 5udz:A 139 88 0.4111 0.2662 0.4205 1.53e-15 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
4 4a75:A 89 82 0.3889 0.3933 0.4268 4.90e-14 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
5 2es2:A 67 66 0.3111 0.4179 0.4242 1.56e-11 3pf4:B, 3pf5:B, 3pf5:A
6 7ot5:B 66 68 0.3111 0.4242 0.4118 3.75e-11
7 1c9o:A 66 66 0.3111 0.4242 0.4242 3.81e-10 1c9o:B, 2hax:A, 2hax:B
8 7oii:B 39 37 0.2000 0.4615 0.4865 6.24e-07
9 7dm1:B 334 60 0.2000 0.0539 0.3000 0.12 7dm1:A, 7dm2:A, 1pc3:A, 1pc3:B
10 3q4r:A 170 54 0.1778 0.0941 0.2963 0.56 3q4o:A, 3q4q:A
11 3wem:A 830 42 0.1556 0.0169 0.3333 3.9 3w37:A, 3wel:A, 3wen:A, 3weo:A
12 5yo9:B 366 37 0.1556 0.0383 0.3784 4.1 5yoa:B
13 2vn0:A 464 26 0.1111 0.0216 0.3846 5.7 2nnh:A, 2nnh:B, 2nni:A, 2nnj:A, 1pq2:A, 1pq2:B
14 8fqc:A 168 48 0.1667 0.0893 0.3125 6.1
15 6ueb:A 2099 27 0.1333 0.0057 0.4444 6.6
16 6rxd:A 509 54 0.1667 0.0295 0.2778 6.7 6rxd:B, 6rxe:A, 6rxe:B, 6rxf:A, 6rxf:B, 6rxg:A, 6rxg:B
17 5lj3:C 882 62 0.2111 0.0215 0.3065 7.6 6exn:C, 5gam:C, 5gan:C, 5lj5:C, 5lqw:B, 5mps:C, 5mq0:C, 5nrl:C
18 6iqj:B 131 30 0.1444 0.0992 0.4333 7.8 6iqj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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