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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFS
SPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTDEVIFKSGGN
PYGASVTANGQPLLENDRASIRHQVRRQVELTAKLLEGGS

The query sequence (length=200) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1yrh:F 202 200 1.0000 0.9901 1.0000 1.25e-148 1yrh:A, 1yrh:B, 1yrh:C, 1yrh:D, 1yrh:E, 1yrh:G, 1yrh:H
2 4laf:A 207 205 0.4250 0.4106 0.4146 4.43e-38 4laf:B, 4laf:C, 4laf:D
3 7q6n:D 204 202 0.3800 0.3725 0.3762 8.34e-30 3b6i:A, 3b6i:B, 3b6j:A, 3b6j:B, 3b6k:A, 3b6k:B, 3b6m:A, 3b6m:B, 4dy4:A, 4dy4:C, 5f12:A, 5f12:B, 7q6n:A, 7q6n:B, 7q6n:C, 2r96:A, 2r96:C, 2r97:A, 2r97:C, 4yqe:A, 4yqe:B, 3zho:A, 3zho:B
4 5f4b:A 173 200 0.3650 0.4220 0.3650 2.47e-25 5f4b:B
5 2a5l:B 175 195 0.2750 0.3143 0.2821 4.24e-14 2a5l:A, 1zwl:A
6 3f6r:A 147 50 0.1050 0.1429 0.4200 0.004 3f6r:B, 3f6r:C, 3f6r:D, 3f6s:A, 3f6s:G, 3f6s:B, 3f6s:D, 3f6s:E, 3f6s:F, 3f6s:H, 3f6s:I, 3f90:A, 3f90:B, 3f90:D, 3f90:E, 3f90:F, 3f90:H, 3f90:I, 3f90:G
7 3kap:A 147 50 0.1050 0.1429 0.4200 0.006 3kaq:A
8 2fz5:A 137 43 0.0900 0.1314 0.4186 0.018
9 7d38:A 288 207 0.2450 0.1701 0.2367 0.20 7d39:A, 7d3a:A, 7d3b:A
10 3b39:A 317 43 0.0750 0.0473 0.3488 5.2 3b39:B
11 3zgj:B 343 31 0.0650 0.0379 0.4194 7.8 3zgj:A
12 4ure:B 248 38 0.0650 0.0524 0.3421 7.8 4urf:A, 4urf:B
13 8uua:v 418 25 0.0500 0.0239 0.4000 9.2 8a57:D, 8uu7:v, 8uu8:v, 8uu9:v

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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