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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PVIETVQRAAAALLGASAAEVDPEAHFSDLGGDSLSALTYSNFLHEIFQVEVPVSVIVSAANNLRSVAAHIEKERSSDRP
TFASVHGAGATTIRASDLKLEKFLDAQTLAAAPSLPRPASEVRTVLLTGSNGWLGRFLALAWLERLVPQGGKVVVIVRGK
DDKAAKARLDSVFESGDPALLAHYEDLADKGLEVLAGDFSDADLGLRKADWDRLADEVDLIVHSGALVNHVLPYSQLFGP
NVVGTAEVAKLALTKRLKPVTYLSTVAVAVGVEPSAFEEDGDIRDVSAVRSINGYGNSKWAGEVLLREAYEHAGLPVRVF
RSDMILAHRKYTGQLNVPDQFTRLILSLLATGIAPKSFYQLDATGGRQRAHYDGIPVDFTAEAITTLGLAGSDGYHSFDV
FNPHHDGVGLDEFVDWLVEAGHPISRVDDYAEWLSRFETSLRGLPEAQRQHSVLPLLHAFAQPAPAIDGSPFQTKNFQSS
VQEAKVGAEHDIPHLDKALIVKYAEDIKQLGL

The query sequence (length=512) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5msr:B 520 517 1.0000 0.9846 0.9903 0.0 5msp:A, 5msr:A, 5msr:C, 5msr:D, 5msv:A, 5msv:B, 5msv:C, 5msv:D
2 5msu:B 459 459 0.5410 0.6035 0.6035 0.0 5mso:A, 5msu:C, 5msu:A
3 4u7w:B 394 420 0.2539 0.3299 0.3095 9.04e-43 4u7w:A
4 5mss:A 717 76 0.1406 0.1004 0.9474 1.42e-34 5mst:A, 5mst:B, 5msw:A
5 6vtj:A 472 348 0.1602 0.1737 0.2356 1.36e-09
6 7eoz:A 482 155 0.0938 0.0996 0.3097 2.27e-07 7eoz:B
7 8jfh:E 79 53 0.0430 0.2785 0.4151 0.001 8jfn:B
8 8v4h:B 342 290 0.1191 0.1784 0.2103 0.005 8v4g:A, 8v4g:B, 8v4h:A
9 6nki:A 356 152 0.0801 0.1152 0.2697 0.006
10 2eht:A 77 51 0.0371 0.2468 0.3725 0.052
11 6kfu:A 527 70 0.0371 0.0361 0.2714 0.077 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
12 2pzm:A 316 230 0.1250 0.2025 0.2783 0.12 2pzk:A, 2pzk:B, 2pzl:A, 2pzl:B, 2pzm:B
13 7td3:R 292 49 0.0254 0.0445 0.2653 0.31 7eo2:A, 7eo4:A, 7evy:D, 7evz:D, 7ew0:D, 7ew7:D, 8g94:A, 7td4:R, 7vie:F, 7vif:F, 7vig:F, 7vih:F, 7wf7:A
14 8e73:AB 85 36 0.0352 0.2118 0.5000 0.38
15 3sxp:D 314 149 0.0840 0.1369 0.2886 0.49 3sxp:A, 3sxp:B, 3sxp:C, 3sxp:E
16 7ar7:T 84 53 0.0332 0.2024 0.3208 0.69 7ar8:T, 8bq6:T
17 2fac:A 77 51 0.0371 0.2468 0.3725 0.94 2fac:B, 2fad:A, 2fad:B, 2fae:A, 4keh:C, 4keh:D, 1l0i:A, 6n3p:I, 6n3p:L, 6n3p:J, 3ny7:B, 7nyw:G, 7nyx:G, 7nyy:G, 7nyz:G, 7nz0:G, 7nz2:G1, 7nz2:G2, 7nz2:G3, 7nz2:G4, 7nz3:G1, 7nz3:G2, 7nz4:G1, 7nz4:G2, 1t8k:A, 5usr:K, 5vcb:f, 5vcb:e, 5vcb:d, 5vcb:F, 5vcb:D, 5vcb:X, 6w1d:C, 6w98:B
18 4lis:A 364 194 0.0938 0.1319 0.2474 1.1 4lis:B, 4lis:C
19 6vlo:A 319 174 0.0781 0.1254 0.2299 1.4 6vlo:B, 6vlo:C, 6vlo:D
20 5ovk:A 242 43 0.0391 0.0826 0.4651 1.5 5ovk:B, 5ovk:C, 5ovk:D, 5ovl:A, 5ovl:B, 5ovl:C, 5ovl:D
21 5d0n:A 274 164 0.0859 0.1606 0.2683 1.6 5d1f:A
22 4mrt:C 77 46 0.0254 0.1688 0.2826 1.7
23 8fip:A 338 57 0.0332 0.0503 0.2982 2.0 8fio:A, 8fio:B, 8fip:B
24 3st7:A 369 29 0.0293 0.0407 0.5172 2.3 2zkl:A
25 1g6k:A 261 60 0.0391 0.0766 0.3333 2.6 1g6k:B, 1g6k:E, 1g6k:F, 1gco:A, 1gco:B, 1gco:E, 1gco:F, 1gee:A, 1gee:B, 1gee:E, 1gee:F, 1rwb:A, 1rwb:B, 1rwb:E, 1rwb:F
26 6n7l:C 344 88 0.0449 0.0669 0.2614 2.7 6n7l:A, 6n7l:B, 6n7l:D, 6n7l:E, 6n7l:F, 6n7l:G, 6n7l:H, 6n7l:I, 6n7l:J, 6n7l:K, 6n7l:L
27 3c1t:B 326 73 0.0488 0.0767 0.3425 3.5 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
28 6zll:A 321 146 0.0645 0.1028 0.2260 3.7 6zl6:A, 6zl6:B, 6zla:A, 6zla:B, 6zla:C, 6zla:D, 6zld:A, 6zld:B, 6zlj:A, 6zlj:B, 6zlk:A, 6zlk:B, 6zlk:C, 6zlk:D, 6zll:B, 6zll:C, 6zll:D
29 4s2r:P 615 60 0.0352 0.0293 0.3000 3.9 4s2r:Q, 4s2t:P, 4s2t:Q
30 8ahq:C 78 57 0.0254 0.1667 0.2281 4.1 8ahq:D
31 4ews:A 472 100 0.0508 0.0551 0.2600 4.2 4f2a:A, 2obd:A
32 7xpo:A 344 70 0.0449 0.0669 0.3286 4.7 7xpo:B, 7xpp:B, 7xpp:A, 7xpq:A, 7xpq:B
33 8jat:A 204 50 0.0332 0.0833 0.3400 4.9
34 5bp4:A 1102 106 0.0586 0.0272 0.2830 5.0 5bp2:A, 5bp4:B, 5bp4:C, 5bp4:D, 5bp4:E, 5bp4:F, 5bp4:G, 5bp4:H, 5bp4:J, 5bp4:K, 5bp4:M, 5bp4:N, 5bp4:P
35 6ltb:A 928 54 0.0352 0.0194 0.3333 5.5 6ltc:A, 6ltd:A, 6ltd:B
36 7eps:A 310 93 0.0449 0.0742 0.2473 6.6 7eps:B, 7eps:C, 7eps:D, 3wmx:A, 3wmx:B, 3wmx:C, 3wmx:D
37 4ipi:A 351 112 0.0566 0.0826 0.2589 6.7 4ipj:A, 6ppw:A, 6ppy:A, 6ppz:A, 2wqp:A, 1xuu:A, 1xuz:A
38 1gz6:B 278 103 0.0605 0.1115 0.3010 7.0
39 3vvb:A 270 148 0.0703 0.1333 0.2432 7.4
40 8cg6:C 75 55 0.0332 0.2267 0.3091 9.1
41 8sij:A 445 95 0.0488 0.0562 0.2632 9.2 8sij:B
42 7qd4:A 908 37 0.0293 0.0165 0.4054 9.3 7qd4:D, 7qd5:A, 7qd5:D, 7qd6:A, 7qd6:D
43 3wmw:B 278 93 0.0469 0.0863 0.2581 9.7 3wmw:A
44 5ts3:A 265 29 0.0254 0.0491 0.4483 9.7 5ts3:B
45 4hp8:B 246 110 0.0664 0.1382 0.3091 9.8 4hp8:A
46 6z0p:A 242 105 0.0547 0.1157 0.2667 9.9 6z0p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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