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BioLiP
>protein
PVEFPKSLRASSHSSEGGTTKEEDIYGYELLYRSAFASYIAPTGAWNLVWFQAADGSIKQARWYGEWVISTVLAPGKALQ
GTPLTALLWGPQDTVRLYYLSPQFELQEWCWDTKNGADNKYDGALNAAKVKVAPYSKLGAVSFGGANLRVYYQGTNNKLE
EYTFGGGQGWKKGATLPGDPLPGTYISFVNRNKWDANPPSIRGYFQTVTGSLAEQVWETGGWRIGQFVIPAAPFLTPISA
TVSPEKDFPKIHVYWLSVESTIIESVNWHGWKAPKQIDNISVVKADISATSFTRDDGTVDVRIYGTAQLNVLFERIFRYG
VWEEKIHSISVGKEIPIEVVGVA

The query sequence (length=343) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7c39:A 346 343 1.0000 0.9913 1.0000 0.0 7c38:A, 7c38:B, 7c39:B, 7c3c:A, 7c3c:B, 7c3d:A, 7c3d:B
2 5eo8:A 311 249 0.2478 0.2733 0.3414 3.85e-25 5eo7:A, 5eo7:B, 5eo7:C, 5h47:A, 5h47:B, 5h47:C, 5h47:J, 5h47:D, 5h47:E, 5h47:F, 5h47:G, 5h47:K, 5h47:H, 5h47:I, 5h47:L
3 5eo8:A 311 207 0.1458 0.1608 0.2415 4.30e-05 5eo7:A, 5eo7:B, 5eo7:C, 5h47:A, 5h47:B, 5h47:C, 5h47:J, 5h47:D, 5h47:E, 5h47:F, 5h47:G, 5h47:K, 5h47:H, 5h47:I, 5h47:L
4 6z6c:BBB 317 249 0.2362 0.2555 0.3253 4.30e-20 4agi:A, 4agi:B, 4agi:C, 4agi:D, 4agt:A, 4agt:B, 4ah4:A, 4ah4:B, 4aha:A, 4aha:B, 4c1y:A, 4c1y:B, 4c1y:C, 4c1y:D, 4d4u:A, 4d4u:B, 4d52:A, 4d52:B, 4d52:C, 4d52:D, 6z6c:AAA
5 6z6c:BBB 317 215 0.1603 0.1735 0.2558 2.85e-07 4agi:A, 4agi:B, 4agi:C, 4agi:D, 4agt:A, 4agt:B, 4ah4:A, 4ah4:B, 4aha:A, 4aha:B, 4c1y:A, 4c1y:B, 4c1y:C, 4c1y:D, 4d4u:A, 4d4u:B, 4d52:A, 4d52:B, 4d52:C, 4d52:D, 6z6c:AAA
6 6z6c:BBB 317 151 0.1195 0.1293 0.2715 0.043 4agi:A, 4agi:B, 4agi:C, 4agi:D, 4agt:A, 4agt:B, 4ah4:A, 4ah4:B, 4aha:A, 4aha:B, 4c1y:A, 4c1y:B, 4c1y:C, 4c1y:D, 4d4u:A, 4d4u:B, 4d52:A, 4d52:B, 4d52:C, 4d52:D, 6z6c:AAA
7 5mxc:A 313 292 0.2391 0.2620 0.2808 1.20e-18 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
8 5mxc:A 313 191 0.1312 0.1438 0.2356 1.02e-04 6gke:A, 1iub:A, 1iuc:A, 1ofz:A, 1ofz:B
9 6trv:AAA 294 224 0.2245 0.2619 0.3438 4.46e-18 6trv:BBB
10 6trv:AAA 294 206 0.1749 0.2041 0.2913 1.98e-06 6trv:BBB
11 6trv:AAA 294 164 0.1399 0.1633 0.2927 0.003 6trv:BBB
12 7e7v:A 271 156 0.1370 0.1734 0.3013 7.19e-05 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
13 7e7v:A 271 238 0.1953 0.2472 0.2815 3.13e-04 2bt9:A, 2bt9:B, 2bt9:C, 4csd:A, 4csd:B, 7e7n:A, 7e7r:A, 7e7r:B, 7e7t:A, 7e7t:B, 7e7u:A, 7e7u:B, 7e7v:B, 7e7v:C, 5o7v:A, 5o7v:B, 6stz:A, 6stz:D, 6stz:B, 6stz:F, 6stz:C, 6stz:E, 6su0:A, 6su0:I, 6su0:K, 6su0:C, 6su0:B, 6su0:J, 6su0:D, 6su0:F, 6su0:M, 6su0:E, 6su0:N, 6su0:O, 3zi8:A, 6zuk:D, 6zuk:E
14 2pok:A 458 46 0.0496 0.0371 0.3696 1.0 2pok:B
15 7bvs:A 290 72 0.0671 0.0793 0.3194 1.9 7exb:A
16 6tm0:A 811 51 0.0554 0.0234 0.3725 2.4 6tlz:A, 6tlz:B, 6tm0:B
17 5m7n:B 428 125 0.1020 0.0818 0.2800 3.5
18 6htn:A 143 122 0.0787 0.1888 0.2213 5.2 6htn:B, 6htn:C, 6htn:D, 6htn:E, 6htn:F
19 1mpy:A 307 55 0.0525 0.0586 0.3273 5.4 1mpy:B, 1mpy:C, 1mpy:D
20 4d7u:A 227 77 0.0612 0.0925 0.2727 6.7 4d7u:B, 4d7v:A, 4d7v:B
21 8j0s:a 237 49 0.0437 0.0633 0.3061 7.5 8j57:a, 8jr0:a, 8jr1:a
22 3aiq:A 491 76 0.0729 0.0509 0.3289 9.0 3air:A, 3ais:A, 3aiv:A, 3aiw:A
23 6f37:A 113 63 0.0554 0.1681 0.3016 9.9 5ajb:A, 5ajb:B, 5ajb:C, 5ajc:A, 5ajc:B, 5ajc:C, 7alf:A, 7alf:B, 7alg:A, 7alg:B, 2bs5:A, 2bs6:A, 2bs6:B, 2bs6:C, 8c9y:A, 8c9z:A, 8cf6:A, 8cf6:C, 8cf6:B, 8cf7:A, 8cf7:B, 8cf7:C, 8cf7:D, 8cf7:E, 8cf7:F, 6f37:B, 6f7w:A, 6f7w:B, 6f7w:C, 6f7x:A, 6f7x:C, 6f7x:B, 6gl5:A, 6gl5:B, 6gl5:C, 4i6s:A, 4i6s:B, 4i6s:C, 5o7u:A, 5o7u:B, 5o7w:A, 5o7w:B, 7p2h:A, 7p2h:B, 7p2i:A, 7p2i:C, 7p2i:B, 7p2j:A, 7p2j:B, 7pr5:A, 7pr5:C, 7pr5:F, 7pr5:B, 7pr5:D, 7pr5:E, 7pr5:G, 7pr5:I, 7pr5:H, 7pr5:J, 7pr5:L, 7pr5:K, 8q6a:A, 8q6b:A, 8q6c:A, 6s99:A, 6s99:C, 6s99:B, 6s99:D, 6s99:F, 6s99:E, 6sth:A, 6sth:B, 6t99:A, 6t99:B, 6t99:C, 6t99:D, 6t99:E, 6t99:F, 6t99:G, 6t99:H, 6t99:I, 6t9a:A, 6t9a:B, 6t9a:C, 6t9b:A, 6t9b:B, 6t9b:C, 6t9b:D, 6t9b:E, 6t9b:F, 6t9b:G, 6t9b:H, 6t9b:I, 6y0x:B, 6y0x:F, 6y0x:C, 6y0x:D, 6y0x:E, 6y0x:A, 6z5g:A, 6z5m:A, 6z5p:A, 6z5p:B, 6z5q:A, 6z5q:B, 6z5w:A, 6z5x:A, 6z5z:A, 6z60:A, 6z62:A, 6zuk:A, 6zuk:B, 6zuk:C, 6zul:A, 6zul:B, 6zul:C, 6zul:D, 6zul:E, 6zul:F, 6zum:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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