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BioLiP
>protein
PVDICTAKPRDIPMNPMCIYRSPEQKIPEATNRRVWELSKANSRFATTFYQHLADSKNDNDNIFLSPLSISTAFAMTKLG
ACNDTLQQLMEVFKFDTISEKTSDQIHFFFAKLNCRLYRKANKASKLVSANRLFGDKSLTFNETYQDISELVYGAKLQPL
DFKENAEQSRAAINKWVSNKTEGRITDVIPSEAINELTVLVLVNTIYFKGLWKSKFSPENTRKELFYKADGESCSASMMY
QEGKFRYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEKELTPEVLQEWLDELEEMMLCVHMPRFRIEDGFSLKE
QLQDMGLVDLFSPEKSKLPGIVAEGRDDLYVSDAFHKAFLEVNEEGTAVVIAGRSLNPNRVCFKANRPFLVFIREVPLNT
IIFMGRVANPCV

The query sequence (length=412) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1e03:L 423 423 0.9903 0.9645 0.9645 0.0 1azx:I, 1azx:L, 2b5t:I, 1br8:I, 1e03:I, 3evj:I, 3evj:L, 2gd4:I, 2gd4:C, 1jvq:I, 3kcg:I, 1lk6:I, 1nq9:I, 1nq9:L, 1r1l:I, 1sr5:A, 1tb6:I
2 4zk0:A 367 376 0.3519 0.3951 0.3856 2.42e-76
3 7qrn:A 364 384 0.3228 0.3654 0.3464 4.67e-65
4 2arq:A 360 382 0.3228 0.3694 0.3482 4.06e-64 2arr:A, 1jrr:A
5 8gxv:A 353 373 0.3034 0.3541 0.3351 9.75e-63
6 8h4x:A 330 333 0.3058 0.3818 0.3784 2.32e-61
7 1ova:A 385 366 0.2913 0.3117 0.3279 1.71e-57
8 4c49:A 367 377 0.2864 0.3215 0.3130 1.64e-50 4bb2:A, 4bb2:B, 4c49:B, 4c49:C, 4c49:D, 2vdy:A, 2vdy:B
9 4aqh:B 383 379 0.2549 0.2742 0.2770 2.06e-50 1a7c:A, 4aqh:A, 4aqh:C, 7aqf:A, 7aqg:A, 1dvm:A, 1dvm:C, 1dvm:D, 4g8o:D, 4g8r:A, 4g8r:B, 4ic0:A, 4ic0:C, 3q02:A, 3q02:B, 3q03:A, 3q03:B, 3r4l:A, 3ut3:B
10 4dy7:F 378 364 0.2816 0.3069 0.3187 2.56e-50
11 5hgc:A 373 373 0.2888 0.3190 0.3190 9.77e-50
12 1jmj:A 397 387 0.3058 0.3174 0.3256 2.26e-49
13 7b2t:A 342 332 0.2524 0.3041 0.3133 2.89e-44 7b2t:B
14 1hp7:A 376 375 0.2694 0.2952 0.2960 4.04e-42 7ael:AAA, 7api:A, 8api:A, 9api:A, 6i4v:A, 1iz2:A, 7npl:A, 8pi2:A, 4pyw:A
15 6hgg:A 339 333 0.2646 0.3215 0.3273 5.23e-41 6ftp:A, 6hgf:A, 6hgi:A, 6hgk:A, 6hgl:A, 6hgm:A, 5om2:A, 5om3:A, 5om7:A
16 7rbw:A 381 387 0.2646 0.2861 0.2817 9.13e-40 7rbw:B
17 1lq8:G 330 331 0.2330 0.2909 0.2900 6.88e-38 3dy0:A, 1lq8:A, 1lq8:C, 1lq8:E
18 7npk:A 352 370 0.2621 0.3068 0.2919 8.68e-38
19 6f4v:A 341 333 0.2621 0.3167 0.3243 4.67e-37
20 3zha:A 380 376 0.2184 0.2368 0.2394 1.42e-35 4au2:A, 4au2:B, 4au2:D, 4au3:A, 4au3:B, 4au3:C, 4au3:D, 7bdu:A, 7bdu:B, 7bee:A, 7bee:B, 7bfi:A, 7bfi:C, 7bfi:D, 7bfi:B, 3zha:B, 3zha:C, 3zha:D, 3zha:K, 3zha:L, 3zha:P, 3zha:Q
21 4x30:A 372 379 0.2549 0.2823 0.2770 2.37e-34 2ceo:A, 2ceo:B, 2riw:A, 2riw:B, 2xn3:A, 2xn3:B, 2xn5:A, 2xn6:A, 2xn6:B, 2xn7:A, 2xn7:B, 4yia:A, 4yia:B
22 5ncw:A 334 310 0.2184 0.2695 0.2903 5.74e-32 5nct:A
23 2v95:A 342 375 0.2403 0.2895 0.2640 8.61e-32
24 6los:A 369 381 0.2549 0.2846 0.2756 4.36e-29
25 4au2:C 338 374 0.1966 0.2396 0.2166 8.29e-26
26 8h4x:B 32 28 0.0340 0.4375 0.5000 0.011
27 3w6x:A 225 73 0.0583 0.1067 0.3288 0.46 3w6x:B, 3w6x:C, 3w6x:F
28 8qqk:B 263 73 0.0534 0.0837 0.3014 0.56 1cyx:A, 1fft:B, 8go3:B, 7n9z:G, 6wti:B, 7xmc:B, 7xmd:B
29 1as4:B 33 25 0.0291 0.3636 0.4800 0.73
30 6hgi:B 35 31 0.0316 0.3714 0.4194 0.87 6ftp:B, 6hgf:B, 6hgg:B, 6hgj:B, 6hgk:B, 6hgl:B, 5om2:B, 5om3:B, 5om7:B
31 2ovq:B 444 58 0.0485 0.0450 0.3448 1.7 2ovr:B, 7t1y:B, 7t1z:B, 5v4b:B
32 6lon:A 804 100 0.0655 0.0336 0.2700 2.0 6lon:B, 6lon:C, 6lon:D
33 6p8v:G 320 75 0.0461 0.0594 0.2533 3.7 6p80:A, 6u7b:A, 6u7b:C
34 4grs:A 333 39 0.0364 0.0450 0.3846 3.8 4c1k:A, 4c1k:B, 4c1k:C, 4c1k:D, 4c1k:E, 4c1k:F, 4c1l:A, 4c1l:B, 4grs:C, 4grs:B, 4grs:D, 1zco:A, 1zco:B
35 5m1k:B 189 29 0.0364 0.0794 0.5172 3.9 5m1n:A, 5m1n:B, 5m1o:A, 5m1o:B, 5m1p:A, 5m1q:A
36 7ohd:B 134 48 0.0388 0.1194 0.3333 4.4
37 6pd2:C 616 64 0.0510 0.0341 0.3281 5.2 6pd1:A, 6pd1:B, 6pd1:D, 6pd2:A, 6pd2:B, 6pd2:D
38 9fa6:A 501 86 0.0534 0.0439 0.2558 8.6 8awk:AAA, 8awr:AAA, 8ax3:A, 8ax3:B, 9f9z:A, 9fa3:A, 9fad:A, 9fal:A, 9fay:A, 9faz:A, 9fb2:A, 9fdi:A, 3gxf:B, 3gxf:D, 5lvx:C, 5lvx:B, 5lvx:A, 5lvx:D, 6moz:A, 2nsx:A, 2nsx:B, 2nsx:C, 2nsx:D, 2nt0:A, 2nt0:B, 2nt0:C, 2nt0:D, 7nwv:AAA, 7nwv:BBB, 8p3e:B, 8p41:A, 8p41:B, 6q1n:A, 6q1n:B, 6q1p:A, 6q1p:B, 6q6k:A, 6q6k:B, 6q6l:A, 6q6l:B, 6q6n:A, 6q6n:B, 3rik:B, 3rik:D, 3ril:A, 3ril:B, 3ril:C, 3ril:D, 6t13:B, 6t13:C, 6t13:A, 6t13:D, 6tjq:BBB, 6tn1:AAA, 2v3d:A, 2v3d:B, 2v3e:A, 2v3e:B, 2vt0:A, 2vt0:B, 2wcg:A, 2wcg:B, 2xwd:A, 2xwd:B, 2xwe:A, 2xwe:B, 1y7v:A, 1y7v:B, 6ytp:AAA, 6ytp:BBB, 6ytr:AAA, 6ytr:BBB, 6yut:AAA, 6yut:BBB, 6yv3:AAA, 6yv3:BBB, 6z39:AAA, 6z39:BBB, 6z3i:BBB

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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