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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PVAVQCGRLFDARSGQLKGPHTLLVADGRIRQVLPGARVVDLGDKVCLPGWTDLHVHLGSQSSPQSYSEDFRLDPVDHAF
RAVGYAEKTLMAGFTSVRDLGGEVSPHLRDAINQGLVRGPRIFAAGKSIATTGGHADPTNGWNERLAHLVGAPGPAEGVV
NSVDEARQAVRQRYKEGSDLIKITATGGVLSYARSGDAPQFTVDEIKAVVDTARDYGFRVAAHAHGTEGMKRAVQAGVTS
IEHGTYMDDEVMRLMKQHGTWYVPTFYAGRFVTEKAAIDGYFPEVVRPKAARIGALISQTAAKAYRNGVRIAFGTDQGVG
PHGDNAREFVYMVEAGIPAAYALQAATVHAAQVLGVDDQGVLEPGKRADVIALAGNPLEDINAVLDVRFVMKDGVIYKQ

The query sequence (length=399) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ihq:A 399 399 1.0000 1.0000 1.0000 0.0 8ihq:B, 8ihq:C, 8ihq:D, 8ihq:E, 8ihq:F, 8ihq:G, 8ihq:H, 8ihr:A, 8ihr:B, 8ihr:C, 8ihr:D, 8ihr:E, 8ihr:F, 8ihr:G, 8ihr:H, 8ihs:A, 8ihs:B, 8ihs:C, 8ihs:D, 8ihs:E, 8ihs:F, 8ihs:G, 8ihs:H, 8j85:A, 8j85:B, 8j85:C, 8j85:D, 8j85:E, 8j85:F, 8j85:G, 8j85:H
2 2qs8:A 406 405 0.5188 0.5099 0.5111 8.02e-134 2qs8:B
3 3be7:A 398 403 0.3734 0.3744 0.3697 1.44e-78 3be7:E, 3be7:B, 3be7:D, 3be7:C, 3be7:F, 3be7:G, 3be7:H, 3dug:A, 3dug:B, 3dug:C, 3dug:D, 3dug:E, 3dug:F, 3dug:G, 3dug:H
4 3mtw:A 403 417 0.4085 0.4045 0.3909 3.24e-75
5 3mkv:A 414 413 0.3684 0.3551 0.3559 2.26e-57 3mkv:B, 3mkv:C, 3mkv:D, 3mkv:E, 3mkv:F, 3mkv:G, 3mkv:H
6 3n2c:A 408 412 0.3534 0.3456 0.3422 2.41e-54 3feq:A, 3feq:B, 3feq:C, 3feq:D, 3feq:E, 3feq:F, 3feq:G, 3feq:H, 3feq:I, 3feq:J, 3feq:K, 3feq:L, 3feq:M, 3feq:N, 3feq:O, 3feq:P, 3n2c:B, 3n2c:C, 3n2c:D, 3n2c:E, 3n2c:F, 3n2c:G, 3n2c:H, 3n2c:I, 3n2c:J, 3n2c:K, 3n2c:L, 3n2c:M, 3n2c:N, 3n2c:O, 3n2c:P
7 4c5y:A 436 376 0.3083 0.2821 0.3271 6.46e-44 4c5y:B
8 4ub9:A 467 458 0.2957 0.2527 0.2576 2.22e-14 4ub9:B, 4ub9:C, 4ub9:D, 4ub9:E, 4ub9:F, 4ub9:G, 4wgx:A
9 4whb:A 459 457 0.2657 0.2309 0.2319 2.25e-12
10 4bjh:A 422 76 0.0602 0.0569 0.3158 3.41e-04 3d6n:A
11 6gdd:A 375 76 0.0602 0.0640 0.3158 4.15e-04 6gde:A, 6gdf:A, 1xrf:A, 1xrt:A, 1xrt:B
12 7cf6:A 384 113 0.0777 0.0807 0.2743 0.001 7cdh:X, 7cf6:B, 7cf6:C, 7cf6:D
13 3nqb:A 587 63 0.0602 0.0409 0.3810 0.001 3nqb:B, 3t81:A, 3t81:B
14 3icj:A 468 187 0.1303 0.1111 0.2781 0.001
15 6ohb:A 435 422 0.2180 0.2000 0.2062 0.002 6ohb:B, 6ohb:C, 6ohb:D, 6ohc:A, 6ohc:B, 6ohc:C, 6ohc:D
16 3lnp:A 441 45 0.0551 0.0499 0.4889 0.011
17 3lnp:A 441 44 0.0401 0.0363 0.3636 0.024
18 1onx:A 389 73 0.0551 0.0566 0.3014 0.016 2aqo:A, 2aqo:B, 2aqv:A, 2aqv:B, 1onw:A, 1onw:B, 1onx:B, 1po9:A, 1po9:B, 1poj:A, 1poj:B, 1pok:B, 1pok:A, 1ybq:A, 1ybq:B
19 3wic:A 360 86 0.0627 0.0694 0.2907 0.070 3wic:B, 3wic:C, 3wic:D, 3wid:A, 3wid:B, 3wid:C, 3wid:D, 3wie:A, 3wie:B, 3wie:C, 3wie:D
20 4f0r:A 436 45 0.0501 0.0459 0.4444 0.072 4f0s:A
21 1wa3:D 203 108 0.0702 0.1379 0.2593 0.072 1wa3:A, 1wa3:B, 1wa3:C, 1wa3:E, 1wa3:F
22 3mpg:A 426 41 0.0451 0.0423 0.4390 0.14 3mpg:B, 4yiw:A, 4yiw:B
23 4gz7:A 492 27 0.0326 0.0264 0.4815 0.25 4h00:A, 4h01:A, 4lcq:A, 4lcr:A, 4lcs:A
24 4v1x:E 474 380 0.1980 0.1667 0.2079 0.28 4v1x:A, 4v1x:B, 4v1x:C, 4v1x:D, 4v1x:F, 4v1y:A, 4v1y:B, 4v1y:C, 4v1y:D, 4v1y:E, 4v1y:F, 4v1y:G, 4v1y:H, 4v1y:I, 4v1y:J, 4v1y:K, 4v1y:L
25 2oof:A 403 389 0.2256 0.2233 0.2314 0.28 2q09:A
26 2i9u:A 419 82 0.0576 0.0549 0.2805 0.42 2i9u:B
27 2z00:A 426 59 0.0551 0.0516 0.3729 0.48
28 4cns:D 479 135 0.0852 0.0710 0.2519 0.79 4cns:A, 4cns:B, 4cns:C
29 1gkr:A 451 58 0.0451 0.0399 0.3103 1.0 1gkr:B, 1gkr:C, 1gkr:D
30 1o12:A 363 64 0.0451 0.0496 0.2812 1.1 1o12:B
31 7nut:A 401 71 0.0576 0.0574 0.3239 1.4 7nut:B, 7nuu:A, 7nuu:B
32 7bkb:G 568 81 0.0576 0.0405 0.2840 1.4 7bkb:g, 7bkc:G, 7bkc:g
33 4izt:A 263 194 0.1153 0.1749 0.2371 2.0 4izs:A, 4izu:A, 4izv:A, 4izw:A, 5ny7:A, 5nyb:A, 5nyc:A, 5nye:A
34 4tqt:D 481 126 0.0877 0.0728 0.2778 2.7 4tqt:A, 4tqt:B, 4tqt:C, 4tqt:E, 4tqt:F
35 2ftw:A 484 42 0.0401 0.0331 0.3810 3.0
36 2vun:A 385 383 0.2281 0.2364 0.2376 3.3 2vun:B, 2vun:C, 2vun:D
37 2g3f:A 414 210 0.1303 0.1256 0.2476 4.2 2bb0:A, 2bb0:B, 2g3f:B
38 2ood:A 463 41 0.0301 0.0259 0.2927 4.6
39 2ood:A 463 35 0.0376 0.0324 0.4286 8.9
40 1gkp:A 458 33 0.0376 0.0328 0.4545 4.6 1gkp:B, 1gkp:C, 1gkp:D, 1gkp:E, 1gkp:F, 1gkq:A, 1gkq:B, 1gkq:C, 1gkq:D
41 2vr2:A 478 36 0.0401 0.0335 0.4444 5.1
42 5t5i:A 569 37 0.0351 0.0246 0.3784 5.1 5t5i:I, 5t5m:A, 5t61:A, 5t61:G, 5t61:M, 5t61:S, 5t61:Y, 5t61:e, 5t61:k, 5t61:q
43 8sgr:A 393 70 0.0526 0.0534 0.3000 5.6 1ivh:A, 1ivh:B, 1ivh:C, 1ivh:D, 8sgr:B, 8sgr:C, 8sgr:D
44 2yll:A 436 57 0.0326 0.0298 0.2281 6.1 4az5:A, 4az6:A, 4az7:A, 4azb:A, 2yl6:A, 2yl8:A
45 6i5s:A 445 54 0.0476 0.0427 0.3519 6.3
46 4crm:P 608 52 0.0326 0.0214 0.2500 6.9 7a1g:x, 8cah:x, 3j16:B
47 3g77:A 423 196 0.1228 0.1158 0.2500 7.1 1k6w:A, 1k70:A, 3o7u:A, 3r0d:A, 1r9x:A, 1r9y:A, 1r9z:A, 1ra0:A, 1ra5:A, 1rak:A, 3rn6:A
48 7bi7:A 279 63 0.0351 0.0502 0.2222 7.1 7bi7:B, 7jmb:A, 7jmb:B
49 8us3:A 552 134 0.0752 0.0543 0.2239 7.2 8us1:A
50 5hmd:A 456 37 0.0401 0.0351 0.4324 8.1 5hmd:B, 5hme:A, 5hme:B, 5hmf:A, 5hmf:B, 4lh8:A, 4lh8:B, 3ls9:A, 3ls9:B, 3lsb:A, 3lsb:B, 3lsc:A, 3lsc:B
51 8b9d:3 569 125 0.0727 0.0510 0.2320 9.0
52 6wvk:D 1184 43 0.0401 0.0135 0.3721 9.0 6wvj:D
53 6zca:Y 1127 43 0.0401 0.0142 0.3721 9.1 6zfb:Y, 6zfb:y
54 6eac:A 476 130 0.0852 0.0714 0.2615 9.2 6eac:B, 6eac:C, 6eac:D
55 2paj:A 421 24 0.0276 0.0261 0.4583 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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