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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PTVRLATRDDVPRAVRTLAAAFADYPATRHTVDPDRHIERVTELQELFLTRVGLDIGKVWVADDGAAVAVWTTPESVEAG
AVFAEIGPRMAELSGSRLAAQQQMEGLLAPHRPKEPAWFLATVGVSPDHQGKGLGSAVVLPGVEAAERAGVPAFLETSAP
RNLPFYERLGFTVTADVEVPEGPRTWCMTRKPGA

The query sequence (length=194) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7k0a:A 196 194 1.0000 0.9898 1.0000 1.04e-139 7k09:A, 7k09:B, 7k09:C, 7k09:D, 7k09:E, 7k09:F, 7k0a:B
2 3dr8:A 173 59 0.1134 0.1272 0.3729 2.10e-04 3dr8:B
3 5jph:B 144 70 0.1082 0.1458 0.3000 0.003 5jph:A, 5jph:C
4 7wx5:A 288 57 0.0928 0.0625 0.3158 0.030 7wx6:A, 7wx7:A
5 5wje:A 159 77 0.1082 0.1321 0.2727 0.039 5wjd:A
6 2bei:A 156 80 0.1134 0.1410 0.2750 0.42 2q4v:A
7 2cnm:A 151 56 0.0979 0.1258 0.3393 0.46 2cnm:B, 2cnm:C, 2cns:A, 2cns:B, 2cns:C, 2cnt:A, 2cnt:B, 2cnt:C, 2cnt:D
8 7daj:B 150 49 0.0722 0.0933 0.2857 0.51 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
9 2j8m:A 171 59 0.0876 0.0994 0.2881 0.74 2bl1:A, 2j8m:B, 2j8r:A, 2j8r:B
10 4zbg:A 154 59 0.0928 0.1169 0.3051 0.76
11 2ge3:A 164 52 0.0722 0.0854 0.2692 0.94 2ge3:B, 2ge3:C
12 2q0y:A 153 63 0.0928 0.1176 0.2857 1.1
13 6ygb:A 159 70 0.0876 0.1069 0.2429 1.7 6ygc:A, 6ygd:A
14 1qap:A 289 110 0.1546 0.1038 0.2727 2.1 1qap:B
15 6t9m:AAA 350 52 0.0979 0.0543 0.3654 2.3
16 5t7e:D 175 54 0.0928 0.1029 0.3333 3.3 5t7d:A, 5t7d:B, 5t7d:C, 5t7d:D, 5t7e:A, 5t7e:B, 5t7e:C
17 7o81:AU 110 51 0.0876 0.1545 0.3333 3.6 6zvh:i
18 4zxh:A 1314 24 0.0515 0.0076 0.4167 4.7 4zxi:A
19 4my0:C 392 52 0.0773 0.0383 0.2885 5.0 4my0:A, 4my0:E, 4my0:B, 4my0:D, 4my0:F
20 3cxq:A 182 54 0.0722 0.0769 0.2593 5.2 2o28:A, 2o28:B
21 5xq3:A 901 21 0.0567 0.0122 0.5238 5.5 5xq3:B, 5xqg:A, 5xqg:B, 5xqg:C, 5xqg:D, 5xqg:E, 5xqg:F, 5xqg:G, 5xqg:H, 5xqj:A, 5xqj:B, 5xqj:C, 5xqj:D, 5xqj:E, 5xqj:F, 5xqj:G, 5xqj:H, 5xqo:A, 5xqo:B
22 3b8g:A 424 65 0.0979 0.0448 0.2923 5.7 3d2m:A, 3d2p:A, 3d2p:B, 4i49:A, 2r8v:A, 2r98:A
23 4ghc:C 361 116 0.1598 0.0859 0.2672 7.2 5bwg:A, 5bwg:B, 5bwg:C, 5bwg:D, 5bwh:A, 5bwh:B, 5bwh:C, 5bwh:D, 3bza:A, 3bza:B, 3bza:C, 3bza:D, 3ecj:A, 3ecj:B, 3ecj:C, 3ecj:D, 3eck:A, 3eck:B, 3eck:C, 3eck:D, 1f1x:A, 1f1x:B, 1f1x:C, 1f1x:D, 4ghc:A, 4ghc:B, 4ghc:D, 4ghd:A, 4ghd:B, 4ghd:C, 4ghd:D, 4ghe:A, 4ghe:B, 4ghe:C, 4ghe:D, 4ghf:A, 4ghf:B, 4ghf:C, 4ghf:D, 4ghg:A, 4ghg:B, 4ghg:C, 4ghg:D, 4ghh:A, 4ghh:B, 4ghh:C, 4ghh:D, 2ig9:A, 2ig9:B, 2ig9:C, 2ig9:D, 2iga:A, 2iga:B, 2iga:C, 2iga:D, 3ojj:A, 3ojj:B, 3ojj:C, 3ojj:D, 3ojk:A, 3ojk:B, 3ojk:C, 3ojk:D, 3ojn:A, 3ojn:B, 3ojn:C, 3ojn:D, 3ojt:A, 3ojt:B, 3ojt:C, 3ojt:D, 1q0c:A, 1q0c:B, 1q0c:C, 1q0c:D, 1q0o:A, 1q0o:B, 5trx:A, 5trx:B, 5trx:C, 5trx:D, 4z6l:A, 4z6l:B, 4z6l:C, 4z6l:D, 4z6m:A, 4z6m:B, 4z6m:C, 4z6m:D, 4z6n:A, 4z6n:B, 4z6n:C, 4z6n:D, 4z6o:A, 4z6o:B, 4z6o:C, 4z6o:D, 4z6p:A, 4z6p:B, 4z6p:C, 4z6p:D, 4z6q:A, 4z6q:B, 4z6q:C, 4z6q:D, 4z6r:A, 4z6r:B, 4z6r:C, 4z6r:D, 4z6s:A, 4z6s:B, 4z6s:C, 4z6s:D, 4z6t:A, 4z6t:B, 4z6t:C, 4z6t:D, 4z6u:A, 4z6u:B, 4z6u:C, 4z6u:D, 4z6v:A, 4z6v:B, 4z6v:C, 4z6v:D, 4z6w:A, 4z6w:B, 4z6w:C, 4z6w:D, 4z6z:A, 4z6z:B, 4z6z:C, 4z6z:D
24 1nba:A 253 56 0.0979 0.0751 0.3393 8.0 1nba:B, 1nba:C, 1nba:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218