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BioLiP
>protein
PTVFRWTGGGKEVYLSGSFNNWSKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNII

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7myj:D 187 75 0.9867 0.3957 0.9867 2.01e-51 6b1u:B, 6b1u:D, 8bik:B, 8bik:E, 6c9f:B, 6c9g:B, 6c9j:B, 4cfe:B, 4cfe:D, 4cff:B, 4cff:D, 5ezv:B, 5ezv:D, 5iso:B, 5iso:D, 7myj:B, 4yef:A, 4yef:B, 4yef:C, 4yef:D, 4yef:E, 4yef:F, 4yef:G, 1z0m:A, 1z0m:B, 1z0m:C, 1z0n:A, 1z0n:B, 1z0n:C, 4zhx:B, 4zhx:D
2 6c9h:B 168 75 0.9733 0.4345 0.9733 5.11e-51 6e4t:B, 6e4u:B, 6e4w:B, 5kq5:B, 4qfr:B, 4qfs:B, 5t5t:B, 5ufu:B
3 6b2e:B 193 76 0.8133 0.3161 0.8026 1.58e-42 4cfh:B, 4rer:B, 4yee:A, 4yee:G, 4yee:B, 4yee:C, 4yee:D, 4yee:N, 4yee:E, 4yee:F, 4yee:H, 4yee:I, 4yee:J, 4yee:K, 4yee:L, 4yee:M, 4yee:O, 4yee:P, 4yee:Q, 4yee:R
4 4pyh:A 293 69 0.3467 0.0887 0.3768 1.52e-08
5 8dl1:A 713 51 0.2267 0.0238 0.3333 0.12 8dge:A, 8dge:B, 8dge:C, 8dge:D, 8dl1:B, 8dl1:C, 8dl1:D, 8dl2:A, 8dl2:B, 8dl2:C, 8dl2:D
6 2cdq:A 470 15 0.1333 0.0213 0.6667 0.63 2cdq:B
7 5avp:A 240 22 0.1333 0.0417 0.4545 1.2 5avp:B, 5avp:C, 5avp:D
8 7esn:A 435 31 0.1600 0.0276 0.3871 1.3 7esk:A, 7esm:A, 8i4d:A, 7yqs:A
9 7dwx:A 605 31 0.1733 0.0215 0.4194 2.1 7dwx:C, 8i92:B, 8i92:D, 8i93:B, 8i93:D, 6m17:A, 6m17:C, 8wby:A, 8wby:D, 8wbz:A, 8wbz:D
10 7ucw:B 281 17 0.1333 0.0356 0.5882 2.3 7ucw:A, 7ucw:C, 7ucw:D
11 3vu2:A 692 23 0.1333 0.0145 0.4348 3.0 7ml5:A, 3vu2:B
12 5clt:A 646 18 0.1067 0.0124 0.4444 3.3 5clt:B, 5clt:C, 5clw:A, 5clw:C, 5clw:B
13 5wsz:A 169 55 0.1867 0.0828 0.2545 3.6 5wsz:B, 5wsz:C, 5wsz:D
14 3ww1:A 242 22 0.1200 0.0372 0.4091 4.0 3ww1:B, 3ww2:A, 3ww2:B, 3ww3:A, 3ww3:B, 3ww4:A, 3ww4:B
15 8p23:B 715 22 0.1333 0.0140 0.4545 4.3 8p23:A, 8p27:A, 8p27:B, 8p28:A, 8p28:B, 8p28:C, 8p28:D, 8p2c:A, 8p2c:B, 8p2c:C, 8p2c:D, 8p2d:A, 8p2d:B, 8p2s:A, 8p2s:B, 8p39:A, 8p39:B
16 4yxb:B 172 52 0.2533 0.1105 0.3654 4.4 4yxb:A
17 6e0l:A 292 18 0.1200 0.0308 0.5000 4.8
18 5kdi:A 211 46 0.2000 0.0711 0.3261 5.3 5kdi:B
19 5iz3:A 316 56 0.1733 0.0411 0.2321 5.5 5iz3:B
20 6unz:A 539 65 0.2800 0.0390 0.3231 6.1 5l2r:A, 5l2r:B, 6msn:A, 6msn:B, 6unz:B, 6unz:C, 6unz:D, 6unz:E, 6unz:F, 6unz:G, 6unz:H, 6uo0:A, 6uo0:B, 6uoi:A, 6uoi:B, 6uoj:A, 6uoj:B, 6up9:A, 6up9:B, 6upm:A, 6upm:B, 6upo:A, 6upo:B, 6uq8:A, 6uq8:B, 6uq9:A, 6uq9:B, 6uqb:A, 6uqb:B, 6uql:A, 6uql:B, 6uqm:A, 6uqm:B, 6uqn:A, 6uqn:B
21 6r4v:C 294 45 0.1867 0.0476 0.3111 7.0 6g31:A, 6g31:B, 6g31:C, 6g31:D, 6g31:F, 6g31:G, 6g31:H, 6g31:I, 6g31:J, 6g31:K, 6g31:L, 2q80:A, 2q80:B, 2q80:C, 2q80:D, 2q80:E, 2q80:F, 6r4v:A, 6r4v:F, 6r4v:E, 6r4v:B, 6r4v:D
22 7wao:A 502 63 0.2267 0.0339 0.2698 7.7 7waj:A, 7wak:A, 7wal:A
23 8xx9:A 620 63 0.2267 0.0274 0.2698 8.6 8xxa:A
24 7w5n:A 492 18 0.0933 0.0142 0.3889 8.9 7w5k:A, 7w5k:B, 7w5k:C, 7w5k:D, 7w5n:B, 7w5n:C, 7w5n:D
25 2fc0:A 196 17 0.1200 0.0459 0.5294 9.1 2fbv:A, 2fbx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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