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BioLiP
>protein
PTPLPQLPSNVRDGENNVASTFLQAFFQLWDHDRLTLIPQFYDSETTFSVVFATDSPQDPASSSCSKFSRNLNILSPRHP
STLQRLFVGSNLIADLWKVLPATRHPSLDQTSQWLIDCHTFPHLADPTGMAPYAMGLMINVNGQCEEADISQNLYGTRTF
SRCFILGPSKPGAPHPYRVLSDQLTLHTWKPQ

The query sequence (length=192) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4x2h:A 192 192 1.0000 1.0000 1.0000 9.53e-144 4x2o:A
2 8hfr:CW 427 182 0.2448 0.1101 0.2582 2.57e-10 8hfr:EX, 4wwu:B, 4wwu:E, 4wwu:G
3 1ez4:B 318 134 0.1979 0.1195 0.2836 1.7 1ez4:A, 1ez4:C, 1ez4:D
4 6tix:BBB 533 64 0.1042 0.0375 0.3125 3.0 6tix:AAA
5 7e7o:A 2003 30 0.0729 0.0070 0.4667 3.6 7lkp:A
6 7e7q:A 1958 30 0.0729 0.0072 0.4667 3.7
7 7m1q:A 1911 30 0.0729 0.0073 0.4667 3.9
8 8f5b:A 1924 30 0.0729 0.0073 0.4667 3.9 7lkz:A
9 6fec:u 76 38 0.0781 0.1974 0.3947 4.6
10 7o9q:B 308 46 0.0729 0.0455 0.3043 6.9 7o9q:A
11 6mfi:A 264 59 0.1146 0.0833 0.3729 7.2
12 6qxz:A 79 32 0.0469 0.1139 0.2812 7.5
13 7wbt:A 899 61 0.0833 0.0178 0.2623 7.8 7wbt:B, 7wbu:A
14 5fq6:C 480 57 0.0885 0.0354 0.2982 8.2 5fq4:A, 5fq4:B, 5fq6:H, 5fq6:L, 5fq6:A, 5fq7:C, 5fq8:A, 5fq8:C
15 2l7p:A 100 32 0.0469 0.0900 0.2812 9.6 5yvx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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