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BioLiP
>protein
PTLTHLEDSLRHDPRGHQRQRLIDCLNEAARRLALELRQPHSADEYARLERQRQSCLAAVRVIDTLWTLHQ

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7y6c:D 71 71 1.0000 1.0000 1.0000 1.61e-46 7y6c:A
2 1s7n:B 179 45 0.1831 0.0726 0.2889 1.6 1s7l:A, 1s7n:A, 1s7n:C, 1s7n:D
3 8wrx:A 86 61 0.2394 0.1977 0.2787 2.2
4 8b9d:L 87 67 0.2676 0.2184 0.2836 2.3 7plo:L
5 7lv6:B 559 35 0.1408 0.0179 0.2857 7.6 4m56:A, 4m56:B, 4m8u:A, 4maz:A, 4mb1:A, 5wcz:A, 5wcz:B
6 4dlq:A 353 49 0.2254 0.0453 0.3265 9.6
7 7cp7:A 430 29 0.1549 0.0256 0.3793 9.8 7cp6:A, 7cp6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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