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BioLiP
>protein
PTATAPGGLSAKAPAMTPLMLDTSSRKLVAWDGTTDGAAVGILAVAADQTSTTLTFYKSGTFRYEDVLWPEAASDETKKR
TAFAGTAISIVGSGSPKRKRKRKRK

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5mfd:F 105 105 1.0000 1.0000 1.0000 3.12e-71
2 1ze2:B 218 43 0.1429 0.0688 0.3488 0.16
3 1ze1:A 308 43 0.1429 0.0487 0.3488 0.32 2ab4:A, 1r3e:A, 1ze1:B, 1ze1:C, 1ze2:A
4 1ze1:D 284 43 0.1429 0.0528 0.3488 0.38
5 8dh0:F 796 69 0.2000 0.0264 0.3043 1.8
6 7q8g:AA 222 25 0.1048 0.0495 0.4400 2.0 1fh0:A, 1fh0:B, 7q8d:AA, 7q8d:BA, 7q8f:BA, 7q8f:AA, 7q8g:BA, 7q8h:AA, 7q8h:BA, 7q8i:AA, 7q8i:BA, 7q8j:AA, 7q8j:BA, 7q8k:AA, 7q8k:BA, 7q8l:AA, 7q8l:BA, 7q8m:AA, 7q8m:BA, 7q8n:AA, 7q8n:BA, 7q8o:BA, 7q8o:AA, 7q8p:AA, 7q8p:BA, 7q8q:AA, 7q8q:BA, 7q9c:AA, 7q9c:BA, 7q9h:AA, 7q9h:BA, 7qff:AA, 7qff:BA, 7qfh:AA, 7qfh:BA, 7qgw:A, 7qgw:B, 7qhj:AA, 7qhj:BA, 7qhk:AA, 7qhk:BA, 7qns:AA, 7qns:BA, 7qo2:AA, 7qo2:BA
7 8dh3:E 825 69 0.2000 0.0255 0.3043 2.1 8dh4:M, 8dh5:E
8 8dh2:E 841 69 0.2000 0.0250 0.3043 2.1 8dh0:B, 8dh1:E, 8dh1:I, 8dh2:I, 8dh3:I, 8dh4:E, 8dh5:I, 1s76:D, 1s77:D
9 8dh5:M 740 69 0.2000 0.0284 0.3043 2.3
10 8dh3:M 775 69 0.2000 0.0271 0.3043 2.3 8dh0:N
11 2cfo:A 484 43 0.1714 0.0372 0.4186 4.7
12 6jd0:A 314 57 0.1619 0.0541 0.2982 6.8 8a4u:A, 8a4u:B, 8a4u:C, 8a4u:D, 8a4v:A, 8a4v:B, 8a4v:C, 8a4v:D, 8a4w:A, 8a4w:B, 8a4w:C, 8a4w:D, 8a4x:A, 8a4x:B, 8a4x:C, 8a4x:D, 8a5b:A, 8a5b:B, 8a5b:C, 8a5b:D, 8ahv:A, 8ahv:B, 8ahv:C, 8ahv:D, 4axl:A, 4axm:A, 4axm:B, 4axm:F, 4axm:I, 4axm:L, 4axm:O, 8b4f:A, 8b4f:B, 8b4f:C, 8b4f:D, 3bc3:A, 3bc3:B, 8c77:A, 8c77:B, 8c77:C, 8c77:D, 6ezp:A, 6ezx:A, 6ezx:B, 5f02:A, 6f06:A, 6f06:B, 8gx2:A, 8gx2:B, 3h89:A, 3h89:B, 3h89:C, 3h89:D, 3h89:E, 3h89:F, 3h8b:A, 3h8b:B, 3h8b:C, 3h8b:F, 3h8b:D, 3h8b:E, 3h8c:A, 3h8c:B, 8het:A, 8hfv:A, 8hfv:B, 8hfv:C, 8hfv:D, 3hha:A, 3hha:B, 3hha:C, 3hha:D, 3hwn:A, 3hwn:B, 3hwn:C, 3hwn:D, 3k24:B, 3k24:A, 5mae:A, 5maj:A, 1mhw:A, 1mhw:B, 1mhw:C, 1mhw:D, 5mqy:A, 3of8:A, 3of9:A, 8ofa:A, 8ofa:B, 8ofa:C, 8ofa:D, 8oza:A, 8oza:B, 8oza:C, 8oza:D, 8prx:A, 8prx:B, 8prx:C, 8prx:D, 7qkb:A, 7qkb:B, 7qkb:C, 7qkb:D, 7qkc:A, 7qkc:B, 7qkc:C, 7qkc:D, 7qkd:A, 7qkd:B, 7qkd:C, 7qkd:D, 8qkb:A, 8qkb:B, 8qkb:C, 8qkb:D, 8uac:A, 8uac:B, 7w33:A, 7w34:A, 2xu1:A, 2xu1:B, 2xu1:C, 2xu1:D, 2xu3:A, 2xu4:A, 2xu5:A, 2yj2:A, 2yj8:A, 2yj9:A, 2yjb:A, 2yjc:A, 7z58:A, 7z58:B, 7z58:C, 7z58:D, 7zs7:A, 7zs7:B, 7zs7:C, 7zs7:D, 7zvf:A, 7zvf:B, 7zvf:C, 7zvf:D, 7zxa:A, 7zxa:B, 7zxa:C, 7zxa:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218