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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEVPRDLMFHEVYPYHSSGSSVMREH
FAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGP
ANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIYDENFFLFSATSVQGMAQRCGFELVDVQ
RLPVHGGEVRYTLARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKS
ATVTNFCGIGPDLVHSVYDTTPDKQNRLTPGAHIPVRPASAFSDPYPDYALLFAWNHAEEIMAKEQEFHQAGGRWILYVP
EVHIR

The query sequence (length=405) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4e2x:A 405 405 0.9951 0.9951 0.9951 0.0 4e2w:A, 4e2y:A, 4e2z:A, 4e30:A, 4e31:A, 4e32:A, 4e33:A, 3ndi:A, 3ndj:A
2 5t64:A 406 404 0.7827 0.7808 0.7847 0.0 5t64:B, 5t67:A, 5t67:B, 5t6b:A, 5t6b:B, 5t6b:C, 5t6b:D
3 4rv9:A 419 406 0.3951 0.3819 0.3941 5.28e-90 4rvd:A, 4rvf:A, 4rvg:A, 4rvh:A
4 4kdr:A 208 100 0.0667 0.1298 0.2700 4.20e-05 5dpm:A
5 2avn:A 247 176 0.1012 0.1660 0.2330 0.056 2avn:B
6 4l4x:A 503 70 0.0593 0.0477 0.3429 0.37
7 3e8s:A 220 123 0.0642 0.1182 0.2114 1.2
8 6uk5:A 240 101 0.0617 0.1042 0.2475 2.1 6uk5:B
9 8pno:A 202 92 0.0617 0.1238 0.2717 2.2 2b0c:A, 8pne:A, 8pno:B
10 3ks8:B 124 39 0.0346 0.1129 0.3590 4.8 3ks8:C, 3ks8:D, 3ks8:A, 4lg2:A, 4lg2:D
11 4g9i:A 766 35 0.0346 0.0183 0.4000 5.0 4g9i:B, 4g9i:C, 4g9i:D, 4g9i:E, 4g9i:F
12 7z3j:A 1119 93 0.0667 0.0241 0.2903 5.3 2fci:A, 4k45:A, 7nxe:A, 2pld:A, 2ple:A, 5tq1:A, 5tqs:A, 5tqs:B, 5tqs:D, 5tqs:C, 1ywo:A
13 7yn2:A 346 115 0.0815 0.0954 0.2870 6.6 7yn3:A, 7yn3:B
14 2ha8:A 159 32 0.0272 0.0692 0.3438 6.6 2ha8:B
15 6dnz:A 317 40 0.0346 0.0442 0.3500 7.6 6dnz:C
16 1bxr:A 1073 116 0.0741 0.0280 0.2586 8.8 1a9x:A, 1a9x:C, 1a9x:E, 1a9x:G, 1bxr:C, 1bxr:E, 1bxr:G, 1c30:A, 1c30:C, 1c30:E, 1c30:G, 1c3o:A, 1c3o:C, 1c3o:E, 1c3o:G, 1ce8:A, 1ce8:C, 1ce8:E, 1ce8:G, 1cs0:A, 1cs0:C, 1cs0:E, 1cs0:G, 1jdb:B, 1jdb:E, 1jdb:H, 1jdb:K, 1kee:A, 1kee:C, 1kee:E, 1kee:G, 1m6v:A, 1m6v:C, 1m6v:E, 1m6v:G, 1t36:A, 1t36:C, 1t36:E, 1t36:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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