Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSYRVKRMDIAKNDEECVVNAANPRGLPGDGVCKAVYKKWPESFKNSATPVGTAKTVMCGTYPVIHAVGPNFSNYSESEG
DRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQSLNHLFTAMDSTDADVVIYCRDKEWEKKISEAIQMRT

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7h6j:A 163 159 0.9937 0.9693 0.9937 8.35e-119 3gpo:A, 3gpo:B, 3gpo:C, 3gpo:D, 3gpq:A, 3gpq:B, 7h6k:C, 7h6l:C, 7h6m:A, 7h6m:B, 7h6n:A, 7h6o:A, 7h6o:C, 7h6p:C, 7h6q:A, 7h6q:C, 7h6q:D, 7h6r:B, 7h6r:C, 7h6r:D, 7h6s:C, 7h6t:C, 7h6u:A, 7h6u:B, 7h6v:D, 7h6w:C, 7h6x:A, 7h6x:B, 7h6x:C, 7h6x:D, 7h6y:A, 7h6y:C, 7h6z:A, 7h6z:B, 7h70:A, 7h70:C, 7h71:D, 7h72:A, 7h72:D, 7h73:A, 7h73:B, 7h73:C, 7h74:A, 7h74:B, 7h74:D, 7h75:C, 7h76:A, 7h76:B, 7h76:C, 7h77:D, 7h78:A, 7h78:B, 7h79:B, 7h79:C, 7h79:D, 7h7a:C, 7h7b:A, 7h7c:C, 7h7d:B, 7h7e:C, 7h7f:A, 7h7f:C, 7h7f:D, 7h7g:A, 7h7g:B, 7h7g:C, 7h7g:D, 7h7h:A, 7h7i:A, 7h7j:A, 7h7j:B, 7h7j:C, 7h7j:D, 7h7k:A, 7h7k:B, 7h7k:C, 7h7k:D, 7h7l:A, 7h7l:C, 7h7l:D, 7h7m:A, 7h7m:B, 7h7m:C, 7h7n:A, 7h7n:D, 7h7o:A, 7h7o:B, 7h7o:C, 7h7p:A, 7h7p:B, 7h7p:D, 7h7q:B, 7h7q:C, 7h7q:D, 7h7r:A, 7h7r:C, 7h7r:D, 7h7s:B, 7h7s:C, 7h7s:D, 7h7t:A, 7h7t:C, 7h7t:D, 7h7u:B, 7h7u:C, 7h7v:A, 7h7v:B, 7h7v:D, 7h7w:B, 7h7x:C, 7h7x:D, 7h7y:B, 7h7y:D, 7h7z:A, 7h7z:B, 7h7z:C, 7h7z:D, 7h80:A, 7h80:B, 7h80:C, 7h80:D, 7h81:A, 7h81:B, 7h81:C, 7h81:D, 7h82:A, 7h82:B, 7h82:D, 7h83:A, 7h83:B, 7h83:C, 7h83:D, 7h84:A, 7h84:B, 7h84:C, 7h84:D, 7h85:A, 7h85:C, 7h86:A, 7h86:B, 7h86:C, 7h86:D, 7h87:A, 7h87:B, 7h87:C, 7h87:D, 7h88:A, 7h88:B, 7h88:C, 7h88:D, 7h89:A, 7h89:B, 7h89:C, 7h89:D, 7h8a:A, 7h8a:C, 7h8b:A, 7h8b:B, 7h8b:C, 7h8b:D, 7h8c:A, 7h8c:B, 7h8c:C, 7h8c:D, 7h8d:A, 7h8d:B, 7h8e:A, 7h8e:B, 7h8e:C, 7h8e:D, 7h8f:B, 7h8g:A, 7h8g:B, 7h8g:C, 7h8g:D, 7h8h:C, 7h8i:A, 7h8i:C, 7h8i:D, 7h8j:A, 7h8j:B, 7h8j:C, 7h8j:D, 7h8k:A, 7h8k:B, 7h8k:C, 7h8k:D, 7h8l:A, 7h8l:B, 7h8l:C, 7h8l:D, 7h8m:A, 7h8m:B, 7h8m:C, 7h8m:D, 7h8n:A, 7h8n:B, 7h8o:B, 7h8o:C, 7h8o:D, 7h8p:A, 7h8p:B, 7h8p:C, 7h8p:D, 7h8q:D, 7h8r:A, 7h8r:B, 7h8r:D, 7h8s:B, 7h8s:C, 7h8s:D, 7h8t:B, 7h8t:C, 7h8t:D, 7h8u:A, 7h8u:B, 7h8u:C, 7h8u:D, 7h8v:C, 7h8v:D, 7h8w:A, 7h8w:C, 7h8w:D, 7h8x:D, 7h8y:A, 7h8y:B, 7h8y:C, 7h8y:D, 7h8z:B, 7h8z:C, 7h8z:D, 7h90:C, 7h90:D, 7h91:B, 7h91:C, 7h92:D, 7h93:A, 7h93:C, 7h94:C, 7h95:A, 7h95:B, 7h95:C, 7h95:D, 7h96:A, 7h96:B, 7h96:C, 7h96:D, 7h97:A, 7h97:D, 7h98:A, 7h98:B, 7h98:C, 7h98:D, 7h99:A, 7h99:B, 7h9a:A, 7h9a:B, 7h9a:C, 7h9a:D, 7h9b:A, 7h9b:B, 7h9b:C, 7h9b:D, 7h9c:A, 7h9c:C, 7h9d:C, 7h9e:B, 7h9e:D, 7h9f:C, 7h9g:A, 7h9g:B, 7h9g:C, 7h9g:D, 7h9h:A, 7h9h:B, 7h9h:D, 7h9i:A, 7h9i:B, 7h9i:C, 7h9i:D, 7h9j:A, 7h9j:B, 7h9j:C, 7h9j:D, 4tu0:D, 4tu0:A, 6vuq:A, 6vuq:B, 6vuq:C, 6vuq:D, 6w0t:A, 6w0t:B, 6w0t:C, 6w0t:D, 6w7h:A, 6w7h:B, 6w7h:C, 6w7h:D, 6w8k:A, 6w8k:B, 6w8k:C, 6w8k:D, 6w8m:A, 6w8m:B, 6w8m:C, 6w8m:D, 6w8q:A, 6w8q:B, 6w8q:C, 6w8q:D, 6w8y:A, 6w8y:B, 6w8y:C, 6w8y:D, 6w8z:A, 6w8z:B, 6w8z:C, 6w8z:D, 6w91:A, 6w91:B, 6w91:C, 6w91:D
2 6r0r:A 162 159 0.6855 0.6728 0.6855 4.45e-79 6r0f:A, 6r0f:B, 6r0g:A, 6r0g:B, 6r0p:A, 6r0p:B, 6r0t:A, 6r0t:B
3 3gqo:A 161 158 0.5849 0.5776 0.5886 1.23e-63 3gqo:B, 3gqo:C, 3gqo:D, 5mqx:A
4 4gua:A 662 158 0.5660 0.1360 0.5696 1.68e-56 4gua:B, 4gua:C
5 5cb5:R 173 122 0.2390 0.2197 0.3115 4.48e-08 5cb3:A, 5cb5:A, 5cb5:B, 5cb5:C, 5cb5:D, 5cb5:E, 5cb5:F, 5cb5:G, 5cb5:H, 5cb5:I, 5cb5:J, 5cb5:K, 5cb5:L, 5cb5:M, 5cb5:N, 5cb5:O, 5cb5:P, 5cb5:Q, 5cms:R, 5cms:A, 5cms:B, 5cms:C, 5cms:D, 5cms:E, 5cms:F, 5cms:G, 5cms:H, 5cms:I, 5cms:J, 5cms:K, 5cms:L, 5cms:M, 5cms:N, 5cms:O, 5cms:P, 5cms:Q
6 4iqy:A 221 157 0.2893 0.2081 0.2930 2.52e-07 4iqy:B
7 8p0e:B 186 106 0.2264 0.1935 0.3396 7.31e-06 8p0e:A
8 6lh4:A 235 115 0.2138 0.1447 0.2957 8.29e-05 6lh4:B, 6lh4:C, 6lh4:D
9 5fsx:A 233 104 0.2075 0.1416 0.3173 0.007 5fsx:B, 5fsy:A
10 6fx7:A 194 166 0.2390 0.1959 0.2289 0.014 2bfq:A, 2bfr:A, 7wr6:B
11 3vfq:A 375 132 0.2138 0.0907 0.2576 0.038 4d86:A, 5o2d:A, 3q6z:A, 3q71:A
12 3ewp:A 177 113 0.2201 0.1977 0.3097 0.039 3ewp:B
13 8rsl:A 271 72 0.1447 0.0849 0.3194 0.049 5kiv:A, 8rsl:B
14 3ewr:A 167 149 0.2390 0.2275 0.2550 0.085
15 5lbp:A 196 50 0.1132 0.0918 0.3600 0.22 5l9k:A, 5l9k:B, 5l9q:A, 5l9q:B, 5lau:A
16 8rsj:A 262 111 0.2013 0.1221 0.2883 0.36 8rsi:A, 8rsi:B, 8rsj:B, 8rsk:A, 8rsk:B, 8rsk:C
17 5znj:A 563 78 0.1132 0.0320 0.2308 1.4 5znk:A
18 4q3a:C 260 47 0.0881 0.0538 0.2979 2.4 4j43:A, 4j43:B, 4j49:A, 4j49:B, 4j4b:A, 4j4b:B, 4j4h:A, 4j4h:B, 4j4h:C, 4j4h:D, 4jk3:A, 4jk3:B, 4q39:A, 4q39:B, 4q3a:A, 4q3a:B, 4q3a:D, 4q3b:A, 4q3b:B, 4q3b:C, 4q3b:D, 4q3c:A, 4q3c:B, 4q3c:C, 4q3c:D, 4q3d:A, 4q3d:B, 4q3d:C, 4q3d:D, 4q3e:A, 4q3e:B
19 7k7m:B 757 57 0.1195 0.0251 0.3333 3.0 7k7m:A, 7n6b:A
20 6aji:A 873 57 0.1195 0.0218 0.3333 3.1
21 6ajf:A 901 57 0.1195 0.0211 0.3333 3.1 6ajg:A, 6ajh:A, 6ajj:A, 7c2m:A, 7c2n:A, 6or2:A, 7wnx:A
22 6ln0:A 425 112 0.1887 0.0706 0.2679 3.6
23 8tua:A 1329 56 0.1069 0.0128 0.3036 4.1 5d3x:A, 5d3x:B, 5d3y:A, 5d3y:B, 5fi0:A, 5fi0:C, 5fi0:E, 5fi0:G
24 8rsm:A 254 77 0.1384 0.0866 0.2857 4.2
25 7qqk:A 433 68 0.1447 0.0531 0.3382 6.3 7qqk:B, 7qqk:C, 7qqk:D
26 4etj:A 164 67 0.1384 0.1341 0.3284 6.5 4jll:A
27 2dhr:A 458 28 0.0692 0.0240 0.3929 7.3 2dhr:B, 2dhr:C, 2dhr:D, 2dhr:E, 2dhr:F, 4eiw:A, 4eiw:B, 4eiw:C, 4eiw:D, 4eiw:E, 4eiw:F, 1iy0:A, 1iy1:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218