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BioLiP
>protein
PSYLKDDDGRSLILRGFNTASSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAPGVYDQQYLDRVEDRVGW
YAERGYKVMLDMHQDVYSGAITAIGNGAPAWATYMDGLPVEPQPRWELYYIQPGVMRAFDNFWNTTGKHPELVEHYAKAW
RAVADRFADNDAVVAYDLMNEPFGGSLQGPAFEAGPLAAMYQRTTDAIRQVDQDTWVCVAPQAIGVNQGLPSGLTKIDDP
RAGQQRIAYCPHLYPLPLDHEGLARTLTDVTIDAWRANTAHTARVLGDVPIILGEFGLDTTLPGARDYIERVYGTAREMG
AGVSYWSSDPGPWGPYLPDGTQTLLVDTLNKPYPRAVAGTPTEWSSTSDRLQLTIEPDAAITAPTEIYLPEAGFPGDVHV
EGADVVGWDRQSRLLTVRTPADSGNVTVTVTPAA

The query sequence (length=434) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2osx:A 449 448 0.9977 0.9644 0.9665 0.0 2osy:A, 2osy:B, 2oyk:A, 2oyk:B, 2oyl:A, 2oyl:B, 2oym:A, 2oym:B
2 5j14:A 450 450 0.3018 0.2911 0.2911 3.04e-27 5j14:B, 5j7z:A
3 7lpp:A 732 144 0.1060 0.0628 0.3194 3.35e-10 7lpp:B, 7lpp:C, 7lpp:D, 7lpq:A, 7lpq:B, 7lpq:C, 7lpq:D
4 6r2j:D 329 347 0.2028 0.2675 0.2536 3.64e-10 6r2j:A
5 2jeq:A 359 338 0.1590 0.1922 0.2041 1.07e-04
6 8ibt:A 694 140 0.0991 0.0620 0.3071 1.77e-04 8ibs:A, 8ibs:B, 8ibs:C, 8ibs:D, 8ibs:E, 8ibs:F, 8ibt:B
7 4u5k:A 304 142 0.0737 0.1053 0.2254 3.64e-04 4u5i:A, 4u5i:B, 4u5k:B
8 4yzt:A 512 145 0.0760 0.0645 0.2276 6.40e-04
9 3amg:B 291 148 0.0714 0.1065 0.2095 0.001
10 5a8m:A 337 255 0.1359 0.1751 0.2314 0.001 5a8m:B, 5a8m:C, 5a8n:A, 5a8o:A, 5a8p:A, 5a8q:A, 5a94:A, 5a94:B, 5a94:C, 5a94:D, 5a94:E, 5a94:F, 5a95:A, 5a95:B, 5a95:C
11 4v2x:A 534 284 0.1498 0.1217 0.2289 0.003
12 6ujf:A 301 194 0.0922 0.1329 0.2062 0.007
13 4w88:B 340 167 0.0853 0.1088 0.2216 0.012 4w86:A, 4w86:B, 4w87:A, 4w87:B, 4w88:A, 4w89:A, 4w89:B
14 3amg:A 311 112 0.0530 0.0740 0.2054 0.017 3aof:B, 3aof:A, 3azr:A, 3azr:B, 3azs:A, 3azs:B, 3azt:A, 3azt:D, 3mmw:A, 3mmw:B, 3mmw:C, 3mmw:D
15 5ljf:A 321 317 0.1521 0.2056 0.2082 0.020 5ljf:B, 4m24:A, 7p6h:A, 7p6h:B, 7p6j:A, 7p6j:B, 7p6j:C, 7p6j:D, 6zz3:A, 6zz3:B, 6zz3:C, 6zz3:D
16 5d8z:A 324 129 0.0760 0.1019 0.2558 0.026 5d8z:B
17 4uzs:A 687 54 0.0461 0.0291 0.3704 0.032 4ucf:A, 4ucf:B, 4ucf:C, 4uzs:B
18 4hu0:A 330 254 0.1406 0.1848 0.2402 0.064
19 7vt5:A 311 155 0.1014 0.1415 0.2839 0.065 7vt6:A, 7vt7:A
20 6skg:Bp 232 119 0.0783 0.1466 0.2857 0.12
21 5dfa:A 685 187 0.1060 0.0672 0.2460 0.20 5dfa:B, 5dfa:C, 4oif:A, 4oif:B, 4oif:C
22 8bqb:A 331 187 0.1037 0.1360 0.2406 0.20 8bqb:B, 8bqb:C
23 4uni:A 689 156 0.0899 0.0566 0.2500 0.22 4uni:B, 4uni:C, 4uoz:A, 4uoz:B, 4uoz:C
24 3nco:A 313 199 0.1060 0.1470 0.2312 0.36 3nco:B, 3rjy:A
25 8bqa:AAA 298 98 0.0622 0.0906 0.2755 0.39
26 3ays:A 357 303 0.1336 0.1625 0.1914 0.43
27 1cen:A 334 118 0.0599 0.0778 0.2203 0.70
28 8kaq:A 401 52 0.0346 0.0374 0.2885 0.87 8kaq:B, 8kaq:C
29 5d9n:A 349 72 0.0438 0.0544 0.2639 1.0 5d9m:A, 5d9m:B, 5d9n:B, 5d9o:A, 5d9o:B, 5d9p:A, 5d9p:B
30 8kaq:D 364 52 0.0346 0.0412 0.2885 1.2
31 6qro:A 291 102 0.0576 0.0859 0.2451 2.1 6qro:B, 6qro:C, 6qro:D
32 6gmf:A 386 115 0.0576 0.0648 0.2174 2.5
33 7r29:A 305 197 0.1060 0.1508 0.2335 2.6 7r29:B, 7r2c:A, 7r2c:B, 7r2d:A, 7r2d:B
34 4d1j:D 540 65 0.0415 0.0333 0.2769 2.7 4d1j:A, 4d1j:B, 4d1j:C, 4d1j:E, 4d1j:F, 4d1j:G, 4d1j:H, 5jaw:A, 5jaw:D, 5jaw:B, 5jaw:C, 5jaw:E, 5jaw:F, 5jaw:G, 5jaw:H, 8pej:A, 8pej:B, 8pej:C, 8pej:D, 8pej:E, 8pej:F, 8pej:G, 8pej:H, 6tbf:A, 6tbf:B, 6tbf:C, 6tbf:D, 6tbf:E, 6tbf:F, 6tbf:G, 6tbf:H, 6tbg:A, 6tbg:B, 6tbg:C, 6tbg:D, 6tbg:E, 6tbg:F, 6tbg:G, 6tbg:H, 6tbh:A, 6tbh:C, 6tbh:B, 6tbh:D, 6tbh:E, 6tbh:G, 6tbh:F, 6tbh:H, 6tbi:A, 6tbi:B, 6tbi:C, 6tbi:D, 6tbi:E, 6tbi:F, 6tbi:G, 6tbi:H, 6tbj:A, 6tbj:B, 6tbj:C, 6tbj:D, 6tbj:E, 6tbj:F, 6tbj:G, 6tbj:H, 6tbk:A, 6tbk:B, 6tbk:C, 6tbk:D, 6tbk:E, 6tbk:F, 6tbk:G, 6tbk:H
35 8bgt:A 319 59 0.0346 0.0470 0.2542 2.8 8bgt:B, 8bgx:A, 8bgx:B, 8bgx:C, 8bgx:D, 8bgy:A, 8bgy:B, 8bgy:C, 8bgy:D, 8bgz:A, 8bgz:B, 8bgz:C, 8bgz:D, 8bh0:A, 8bh0:B, 8bh0:C, 8bh0:D, 8bh0:E, 8bh0:F, 8bh0:G, 8bh0:H, 8bib:A, 8bib:B, 8bib:C, 8bib:D, 8bid:A, 8bid:B, 8bid:C, 8bid:D, 8bih:A, 8bih:B, 8bih:C, 8bih:D, 8bih:E, 8bih:F, 8bih:G, 8bih:H, 8bih:I, 8bih:J, 8bih:K, 8bih:L
36 5h4r:A 375 55 0.0346 0.0400 0.2727 3.0
37 1hkv:A 446 159 0.1037 0.1009 0.2830 3.8 1hkv:B
38 1eqc:A 394 178 0.0899 0.0990 0.2191 4.0 4m81:A, 4m82:A, 3n9k:A, 2pb1:A, 2pc8:A
39 4w8b:A 386 204 0.1037 0.1166 0.2206 4.6
40 5l9c:A 304 194 0.1106 0.1579 0.2474 5.2 5l9c:B, 5l9c:C, 5l9c:D
41 5kqb:A 145 58 0.0484 0.1448 0.3621 6.4 5kqc:A
42 6ik5:A 705 119 0.0691 0.0426 0.2521 7.8 6ik5:B, 6ik6:A, 6ik6:B, 6ik7:B, 6ik7:A, 6ik8:B, 6ik8:A, 3w5f:A, 3w5g:A, 3w5g:B
43 6gl0:A 331 192 0.0945 0.1239 0.2135 8.0 6gl0:B, 6gl0:C
44 8cp6:B 1084 57 0.0392 0.0157 0.2982 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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