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BioLiP
>protein
PSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAPDRAVIRCRYNMAPFSVEERKRPGPDRRSVE
ISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKVGDQVVLDLSEEED
KEGQADVPVAILPRTREITLLQSDGNLTPEEFERALDLAVEGCLRIHEVQKEALRKR

The query sequence (length=217) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wnr:B 222 222 0.9908 0.9685 0.9685 1.05e-150 2wnr:D, 2wnr:F
2 2pnz:A 236 221 0.6452 0.5932 0.6335 7.21e-99 2po0:A, 2po1:A, 2po2:A
3 3m7n:E 248 225 0.5806 0.5081 0.5600 2.63e-85 3m7n:F, 3m7n:D, 3m85:F, 3m85:D, 3m85:E
4 2c39:D 248 221 0.5161 0.4516 0.5068 4.42e-80 4ba1:B, 4ba2:B, 2c37:B, 2c37:F, 2c37:N, 2c37:V, 2c37:X, 2c38:B, 2c38:F, 2c38:H, 2c38:J, 2c38:N, 2c38:V, 2c38:X, 2c39:B, 2c39:F, 2c39:H, 2c39:J, 2c39:L, 2c39:N, 2c39:P, 2c39:R, 2c39:T, 2c39:V, 2c39:X, 2jea:B
5 6d6q:B 241 223 0.4101 0.3693 0.3991 2.84e-52 6d6r:B
6 6fsz:BB 244 227 0.3226 0.2869 0.3084 4.25e-29 4ifd:B, 5jea:B, 5k36:B, 8qcf:C
7 1r6m:A 236 235 0.3456 0.3178 0.3191 2.42e-26
8 6d6q:F 252 220 0.3733 0.3214 0.3682 3.53e-25 6d6r:F
9 3dd6:A 244 236 0.3134 0.2787 0.2881 2.40e-21
10 4aim:A 698 223 0.3456 0.1074 0.3363 1.16e-18 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
11 4aim:A 698 169 0.2074 0.0645 0.2663 6.21e-04 4aid:A, 4aid:B, 4aid:C, 4am3:A, 4am3:C, 4am3:B
12 5yjj:A 442 215 0.3456 0.1697 0.3488 5.63e-17 5yjj:B, 5yjj:C, 5yjj:D, 5yjj:E, 5yjj:F
13 3gme:A 482 223 0.3318 0.1494 0.3229 9.96e-16
14 3gme:A 482 214 0.2535 0.1141 0.2570 0.002
15 7ogk:A 695 234 0.3456 0.1079 0.3205 1.19e-14 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
16 7ogk:A 695 102 0.1521 0.0475 0.3235 0.009 3gcm:A, 3gcm:B, 3gcm:C, 3h1c:A, 3h1c:B, 3h1c:C, 3h1c:K, 3h1c:G, 3h1c:I, 3h1c:M, 3h1c:O, 3h1c:R, 3h1c:T, 3h1c:V, 3h1c:X, 7ogk:B, 7ogk:C, 7ogm:L, 7ogm:N, 7ogm:O
17 8wx0:A 597 248 0.3502 0.1273 0.3065 2.19e-14 8wx0:B, 8wx0:C
18 7ld5:A 587 244 0.3456 0.1278 0.3074 4.34e-14 7ld5:B, 7ld5:C
19 3m85:I 259 237 0.2765 0.2317 0.2532 5.89e-13 3m7n:I, 3m7n:G, 3m7n:H, 3m85:G, 3m85:H
20 1e3p:A 645 235 0.3226 0.1085 0.2979 5.25e-11
21 4ba2:A 274 244 0.2627 0.2080 0.2336 4.36e-09 2c37:I, 2c37:U, 2c38:G, 2c38:I, 2c38:U, 2c38:W, 2jea:A
22 2pnz:B 267 117 0.1567 0.1273 0.2906 4.89e-09
23 6d6q:C 265 102 0.1152 0.0943 0.2451 3.17e-04 6d6r:C
24 6czp:A 219 64 0.1106 0.1096 0.3750 0.21 6czp:B, 6czp:C, 6czp:D, 6czp:E, 6czp:F, 6czp:G, 6czp:H, 7uwt:A, 7uwt:B
25 4oo1:E 255 30 0.0599 0.0510 0.4333 0.53
26 5dii:C 199 66 0.1060 0.1156 0.3485 1.2 5dii:A, 5dii:B, 5dii:D, 5dii:E, 5dii:F
27 7aaw:A 315 80 0.0968 0.0667 0.2625 1.8 7aaw:B
28 7ou8:AAA 714 55 0.0691 0.0210 0.2727 2.9 5abe:A, 5abe:B, 5abf:A, 5abf:B, 5abg:A, 5abg:B, 5abh:A, 5abh:B, 4ais:A, 4ais:B, 4aiu:A, 2chn:A, 2chn:B, 2cho:A, 2cho:B, 5fky:A, 5fky:B, 5fl0:A, 5fl0:B, 5fl1:A, 5fl1:B, 2j47:A, 2j4g:A, 2j4g:B, 2jiw:A, 2jiw:B, 7k41:A, 5mi4:A, 5mi5:A, 5mi6:A, 5mi7:A, 7ou8:BBB, 4ur9:A, 4ur9:B, 2vvn:A, 2vvn:B, 2vvs:A, 2w4x:A, 2w66:A, 2w66:B, 2w67:A, 2w67:B, 2wca:A, 2wzh:A, 2wzi:A, 2wzi:B, 2x0h:A, 2x0h:B, 2xj7:A, 2xj7:B, 2xm1:A, 2xm1:B, 2xm2:A, 2xm2:B
29 3dbg:A 379 40 0.0691 0.0396 0.3750 3.0 3dbg:B
30 3el3:A 417 40 0.0691 0.0360 0.3750 3.0 3el3:B
31 7w7g:B 1711 38 0.0737 0.0094 0.4211 4.9
32 5la4:A 508 112 0.1152 0.0492 0.2232 5.0 8b0b:AAA, 8b0b:BBB, 8b0c:AAA, 8b0c:BBB, 8bac:AAA, 8bac:BBB, 8cqi:A, 8cqi:B, 8e07:A, 8e07:B, 8e08:A, 8e08:B, 5e8m:A, 5e97:A, 5e97:B, 5e98:A, 5e98:B, 5e9b:A, 5e9b:B, 5e9c:A, 5e9c:B, 8jyg:A, 8jyg:B, 5l9y:A, 5l9y:B, 5l9z:A, 5l9z:B, 5la7:A, 8ohq:AAA, 8ohq:BBB, 8ohr:AAA, 8ohr:BBB, 7pr7:A, 7pr7:B, 7pr8:A, 7pr8:B, 7prt:A, 7prt:B, 7yi7:A, 7yi7:B, 7yjc:A, 7yjc:B, 6zdm:AAA, 6zdm:BBB
33 1d1g:A 164 66 0.0968 0.1280 0.3182 5.5 1d1g:B
34 4akt:A 330 47 0.0876 0.0576 0.4043 6.9
35 7smg:B 144 36 0.0553 0.0833 0.3333 7.2 7smg:A, 7smg:C, 7smg:D
36 2y0p:C 856 118 0.1198 0.0304 0.2203 9.3 6r29:A, 6r29:B, 6r2a:A, 6r2a:B, 6r2b:B, 6r2b:C, 2y0p:A, 2y0p:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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