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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSVIVVGGQWGDEGKGSIVAYLSLHDEPEIIARGGVGTNAGHSVVINGKKYAVRQIPTGFMQTKARLLIGAGVLVDPEVF
FHELEQLKDFNVKDRVGIDYRCAIIEEKHKQLDRTNGYLHGKIGTTGSGCGPANADRVMRKAKQAKDVKELEPYLTDVAQ
EINDALDEGSLVLVEGTQGFGLSLYYGTYPYVTSKDVTASSVAADVGIGPTRVDEVIVVFKSFPTRVGAGPFPTEMPMEE
ADRLGLVEYGTVTGRRRRVGWFDFEMARYSARINGATMLAVTMLDKYDKEAFGVTDYDKLPRKAKEFIEEIEERVGVPVG
LIKTGPELEHIIDRRDT

The query sequence (length=337) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5k7x:A 337 337 1.0000 1.0000 1.0000 0.0 5k7x:B, 5k7x:C, 5k7x:D, 5k7x:E, 5k7x:F
2 1cg0:A 431 427 0.4184 0.3271 0.3302 4.86e-64 1cg1:A, 1cg3:A, 1cg4:A, 1ch8:A, 1cib:A, 2gcq:A, 1gim:A, 1gin:A, 1hon:A, 1hoo:A, 1juy:A, 1kjx:A, 1kkb:A, 1kkf:A, 1ksz:A, 1nht:A, 1qf4:A, 1qf5:A, 1son:A, 1soo:A
3 1dj2:A 429 420 0.3947 0.3100 0.3167 8.02e-59 1dj2:B
4 4m9d:B 431 416 0.3947 0.3086 0.3197 1.26e-58 4m9d:A
5 1dj3:A 432 420 0.3680 0.2870 0.2952 2.66e-54 1dj3:B
6 6jrq:A 407 404 0.3769 0.3120 0.3144 3.79e-54 6jrq:B, 6jrq:C, 6jrq:D
7 5i34:A 429 414 0.4006 0.3147 0.3261 7.71e-53 5i34:B
8 9f17:A 413 411 0.3620 0.2954 0.2968 5.46e-51 9f17:B, 7pvo:A, 8qwa:A, 6zxq:A
9 2dgn:A 431 422 0.3620 0.2831 0.2891 3.25e-46 1iwe:A, 1iwe:B, 1lny:A, 1lny:B, 1lon:A, 1loo:A, 1mez:A, 1mf0:A, 1mf1:A
10 1p9b:A 424 424 0.3442 0.2736 0.2736 1.91e-43
11 6c25:A 394 405 0.3472 0.2970 0.2889 5.56e-43
12 7vf6:A 366 336 0.3383 0.3115 0.3393 1.21e-39 7vf6:B
13 2v40:A 419 330 0.3116 0.2506 0.3182 6.46e-38
14 6tnh:A 345 278 0.2582 0.2522 0.3129 2.76e-24 6fko:A, 6fko:B, 6fm1:A, 6fm1:B, 6rm2:A, 6rm2:B, 6tnh:B
15 6fm3:A 304 234 0.2047 0.2270 0.2949 2.38e-19 6fm0:A, 6fm0:B
16 7odx:A 350 292 0.2315 0.2229 0.2671 8.49e-19
17 7odx:A 350 50 0.0475 0.0457 0.3200 7.4
18 2e18:A 256 139 0.1157 0.1523 0.2806 1.2 2e18:B
19 8p5d:SI0 167 85 0.0831 0.1677 0.3294 2.4 8p60:SI0, 8p60:RI0, 7qca:SI0
20 8k9n:A 125 75 0.0593 0.1600 0.2667 3.1 8k9p:A, 3nyk:A, 2p80:D, 1paz:A, 3paz:A, 4paz:A, 5paz:A, 6paz:A, 7paz:A, 8paz:A, 1py0:A, 1pza:A, 1pzb:A, 4rh4:A, 5x31:A, 5x31:B
21 4zfh:A 156 104 0.0712 0.1538 0.2308 3.9
22 3s3t:A 145 48 0.0445 0.1034 0.3125 7.3 3s3t:B, 3s3t:C, 3s3t:D, 3s3t:E, 3s3t:F, 3s3t:G, 3s3t:H
23 4at0:A 483 70 0.0623 0.0435 0.3000 8.4 4at2:A
24 6pi9:A 260 67 0.0504 0.0654 0.2537 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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