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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSSTILIPVVVHVVYNNSAQNISDAQIISQIQVLNEDFRRMNADQANTPSAFANLAGNANIEFKLARRDPNGNTTNGITR
TSTSTETFSMEMDNVKFSNLGGNNAWNTRRYLNIWVCNLGDDLLGYAQFPFEFQTKPNTDGVVIHYKHFGRDGSAESPYD
KGRTATHEVGHWLDLRHIWGDDGGSCSGTDNIADTPNQGGYNEGCPSFPKTDHCTNTSPGVMFMNYMDYTYDACMNLFTK
GQVERMRSLFDTQTGIRREMQIYANELTNP

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6r7u:B 308 270 0.9963 0.8734 0.9963 0.0 7od0:AAA, 7od0:BBB, 7od0:CCC, 7od0:DDD, 7od0:EEE, 7od0:FFF, 6r7u:A, 6r7v:A, 6r7w:A
2 8cdb:A 306 255 0.5111 0.4510 0.5412 1.54e-84 8cd8:A, 8cd8:C, 8cdb:B, 8cdb:C, 8cdb:D, 8cdb:E, 8cdb:F, 8cdb:G, 8cdb:H, 8cdb:I, 8cdb:J, 8cdb:K, 8cdb:L, 8cdb:M, 8cdb:N, 2cki:A, 2cki:B, 2j83:A, 2j83:B, 3lum:A, 3lum:B, 3lum:C, 3lum:D, 3lun:A, 3lun:B
3 8sl1:A 843 154 0.1704 0.0546 0.2987 3.23e-11
4 8hgg:C 1484 146 0.1407 0.0256 0.2603 1.56e-05 8hgg:D, 8hgh:A, 8hgh:B
5 8a7e:C 1524 146 0.1370 0.0243 0.2534 4.48e-05 8a7d:C, 8a7e:Q, 7y5n:C, 7y5q:B
6 7ufg:B 1182 146 0.1370 0.0313 0.2534 6.81e-05 8d8o:B
7 7ufg:A 1151 146 0.1370 0.0321 0.2534 7.42e-05
8 4b18:A 427 57 0.0519 0.0328 0.2456 3.1 6wx9:A
9 6skf:BE 255 51 0.0519 0.0549 0.2745 3.6 6skg:BE, 6th6:BE
10 7zkh:A 266 88 0.0741 0.0752 0.2273 5.2 7zkg:A, 7zkg:B
11 4j4m:B 200 63 0.0704 0.0950 0.3016 8.5 4j4m:A
12 2fmd:A 232 47 0.0667 0.0776 0.3830 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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