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BioLiP
>protein
PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2n3o:A 123 77 1.0000 0.6260 1.0000 7.26e-54 2ad9:A, 8bwf:A, 8bwf:D, 8bwf:B, 8bwf:C, 8bwf:E, 8bwf:J, 8bwf:F, 8bwf:G, 8bwf:H, 8bwf:I, 8bwf:K, 8bwf:L, 8bwf:N, 8bwf:O, 8bwf:P
2 6so9:A 112 74 0.4805 0.3304 0.5000 2.23e-19
3 2mqo:A 105 74 0.2727 0.2000 0.2838 8.67e-06
4 2x1f:A 94 61 0.2727 0.2234 0.3443 4.24e-05 2km8:B, 2x1a:A
5 7uj1:B 270 73 0.2597 0.0741 0.2740 0.007 7pu5:B, 7pu5:D, 7pu5:H, 7pu5:J, 7pu5:L, 7sp0:B, 7uj1:A
6 5o1y:A 163 57 0.1818 0.0859 0.2456 0.023 5o1z:A, 5o20:A
7 7qde:B 169 71 0.2468 0.1124 0.2676 0.044 7qdd:B
8 5ifm:C 256 73 0.2727 0.0820 0.2877 0.047 5ifm:A
9 7dvq:Y 140 59 0.1948 0.1071 0.2542 0.064 8i0p:Y, 8i0r:Y
10 6m75:A 167 58 0.1948 0.0898 0.2586 0.084
11 6m75:A 167 59 0.1688 0.0778 0.2203 1.3
12 6gd2:A 84 55 0.2727 0.2500 0.3818 0.14 6g2k:A, 6g2k:B, 6gc5:A, 6gc5:B, 6gc5:C, 6gc5:D, 6gd2:B, 6gd3:B, 6gd3:C
13 8pv1:CI 152 64 0.2727 0.1382 0.3281 0.14 8i9p:CI, 8i9r:CI, 8i9t:CI, 8i9v:CI, 8i9w:CI, 8i9x:CI, 8i9y:CI, 8i9z:CI, 8ia0:CI, 8pv3:CI, 8pv4:CI, 8pv7:CI, 8pvk:CI
14 6n7p:A 186 38 0.1688 0.0699 0.3421 0.49 6n7r:A, 6n7x:A, 7oqc:B, 7oqe:B, 8w2o:A, 5zwn:Q
15 8gho:A 122 36 0.1558 0.0984 0.3333 0.82 8gho:H
16 6g90:B 193 38 0.1688 0.0674 0.3421 0.98
17 4hs8:H 225 39 0.1558 0.0533 0.3077 1.2
18 4qqb:A 169 79 0.1948 0.0888 0.1899 2.4 1b7f:A, 1b7f:B, 4qqb:B
19 1mdx:A 366 60 0.1818 0.0383 0.2333 2.4 1mdo:A, 1mdz:A, 4oca:A
20 5kd2:A 591 23 0.1429 0.0186 0.4783 2.4 5kd5:A, 5kd8:A
21 1nc2:B 219 27 0.1429 0.0502 0.4074 2.7 1nc2:D, 1nc4:B, 1nc4:D
22 1q72:H 220 36 0.1558 0.0545 0.3333 3.4 7lki:DDD, 1qyg:H, 1riu:H, 1riv:H
23 3qnz:B 208 31 0.1688 0.0625 0.4194 5.0
24 7r0j:D 229 66 0.2597 0.0873 0.3030 5.1 8i0n:M, 8i0n:L, 8i0q:M, 8i0q:L, 8i0z:E, 8i0z:L, 8i0z:N, 8i10:E, 8j8r:E, 8j8z:L, 8j8z:M, 6ni2:L, 8vr9:D, 8vra:D, 8vrb:D
25 5xxb:X 124 46 0.1688 0.1048 0.2826 5.1
26 4qvh:A 596 18 0.1169 0.0151 0.5000 5.1 6ct5:A, 6ct5:B, 7ed0:A, 8gkf:A, 8gkf:B, 8gkf:C, 8gkf:D, 8gkf:E, 8gkf:H, 8gkf:I, 7n8e:A, 7n8e:B, 7n8l:A, 7n8l:B, 7n8m:A, 7n8m:B, 4qjk:A, 4qvh:B, 8qzi:A, 8qzi:B, 8qzi:C, 8qzi:D, 8qzj:A, 8qzj:B, 8qzj:C, 8qzj:D, 4u89:A
27 6n7r:C 133 37 0.1429 0.0827 0.2973 5.2 6n7p:C, 6n7x:C, 7oqc:A, 7oqe:A, 8w2o:C, 5zwn:S
28 2v45:A 723 35 0.1948 0.0207 0.4286 5.8 2jim:A, 2jio:A, 2jip:A, 2jiq:A, 2jir:A, 2nap:A, 2v3v:A
29 8i9x:CC 658 74 0.2727 0.0319 0.2838 6.3 8i9r:CC, 8i9t:CC, 8i9v:CC, 8i9w:CC, 8i9y:CC, 8i9z:CC, 8ia0:CC, 8pv2:CC
30 8dhl:B 853 60 0.2208 0.0199 0.2833 6.3 8dhl:A
31 6kxk:D 553 44 0.1818 0.0253 0.3182 8.1 6kxk:F, 6kxu:A, 6kxu:B, 6kxu:C, 6kxu:D, 6kxu:E, 6kxu:F, 6kxu:G, 6kxu:H
32 6vi1:B 232 40 0.1818 0.0603 0.3500 8.2 9aur:H, 9aus:H, 9aus:A, 6b14:H, 6b3k:H, 6b9y:B, 6bae:B, 6bah:B, 9cmi:H, 8d29:A, 8d29:H, 8d29:D, 8d29:G, 6db8:H, 6db9:H, 8dk7:B, 8dk7:D, 9dn4:A, 9dn4:D, 8dp3:H, 4ioi:B, 3ivk:H, 3ivk:A, 4kzd:H, 4kze:H, 7mlx:H, 6mwn:C, 6mwn:H, 3p0v:H, 3p0v:I, 7pgb:a, 7pgb:X, 7pgb:i, 7pgb:m, 7pgb:U, 4q9q:H, 4q9r:H, 2r8s:H, 8sh5:H, 6snh:H, 6sni:H, 7stf:H, 7szu:H, 8t29:A, 8t2a:A, 8t2b:A, 8t2o:A, 7u0y:H, 8u4v:H, 5u5f:B, 5u5m:B, 8u5b:H, 5u6a:B, 6u8d:H, 6u8k:H, 6u8k:D, 6u8k:F, 8uiw:H, 8uiw:A, 6uj9:H, 8uta:H, 8uta:A, 6vi1:E, 6vi1:F, 6vi1:H, 6vi1:J, 6vi1:L, 8vm8:H, 8vm9:H, 8vm9:A, 8vma:A, 8vma:H, 8vmb:H, 6w51:O, 6x5m:H, 6x5m:h, 6x5n:H, 6x5n:h, 4xgz:A, 4xgz:C, 4xgz:G, 4xgz:H, 4xgz:J, 4xgz:M, 4xgz:O, 4xgz:Q, 4xgz:S, 4xgz:U, 4xgz:W, 4xh2:A, 4xh2:C, 4xh2:E, 4xh2:G, 4xh2:H, 4xh2:J, 6xjq:H, 6xjq:C, 6xjw:C, 6xjw:H, 6xjy:H, 6xjy:C, 6xjz:H, 6xjz:C
33 1r0a:H 225 19 0.1299 0.0444 0.5263 8.9
34 4dgv:H 226 37 0.1429 0.0487 0.2973 9.3 4dgy:H, 5kzp:H, 5kzp:E, 5kzp:F, 5kzp:G
35 6nud:J 741 27 0.1299 0.0135 0.3704 9.9 6ifk:A, 6ifn:A, 6ify:A, 6ifz:A, 6ig0:A, 6nue:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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