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BioLiP
>protein
PSPFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKVPARGKALIPTDLSIAVPEGTYARIAPRSGLAWKHSIDVGAGVI
DADYRGPVGVILFNHSDADFEVKFGDRIAQLIIEKIVTPDVVEVDDLDETVRGDGGFGSTGV

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4oop:B 142 142 1.0000 1.0000 1.0000 1.55e-98 4oop:A, 4oop:C
2 6mjk:A 144 137 0.6338 0.6250 0.6569 6.62e-63
3 5f9k:B 130 129 0.6479 0.7077 0.7132 4.70e-62 5f9k:A, 5f9k:C
4 3f4f:A 138 135 0.5211 0.5362 0.5481 4.42e-48 3f4f:B, 3f4f:C, 3p48:A, 3p48:C, 3p48:B
5 6ljj:A 150 128 0.5352 0.5067 0.5938 2.38e-47 3ara:A, 3ara:C, 3ara:B, 3arn:A, 3arn:C, 3arn:B, 3ehw:A, 3ehw:B, 3ehw:C, 3ehw:X, 3ehw:Y, 3ehw:Z, 5h4j:A, 2hqu:A, 2hqu:B, 2hqu:C
6 2ol1:C 125 119 0.4437 0.5040 0.5294 3.62e-37 2oke:A, 2oke:C, 2oke:B, 2ol1:A, 2ol1:B
7 8hrv:B 145 140 0.3873 0.3793 0.3929 8.52e-31 8hrv:A, 8hrv:C
8 7n6s:C 147 142 0.4577 0.4422 0.4577 5.47e-30 7n6s:A, 7n6s:B, 7n6s:F, 7n6s:D, 7n6s:E
9 5cct:A 169 166 0.3803 0.3195 0.3253 3.05e-21 5cco:A, 5nyz:A, 5nz2:A, 3zez:A, 3zf0:A, 3zf1:A, 3zf4:A, 3zf5:A, 3zf6:A
10 6hde:B 152 131 0.3592 0.3355 0.3893 7.02e-21 1eu5:A, 1euw:A, 6hde:A, 6hde:C, 2hrm:A, 1rn8:A, 1rnj:A, 1seh:A, 1syl:A
11 5y5p:D 171 152 0.3803 0.3158 0.3553 4.61e-20 5y5p:A, 5y5p:B, 5y5p:C, 5y5p:E, 5y5p:F, 5y5q:A, 5y5q:B, 5y5q:C
12 4wrk:A 158 150 0.3239 0.2911 0.3067 5.43e-18 4gv8:A, 4gv8:C, 4gv8:B, 4gv8:D, 4gv8:F, 4gv8:E, 4wrk:B, 4wrk:C, 4wrk:D, 4wrk:E, 4wrk:F
13 4gcy:A 163 131 0.3380 0.2945 0.3664 1.13e-16 8cga:A, 5ect:A, 5edd:A, 3h6d:A, 3hza:A, 3i93:A, 3loj:A, 2py4:A, 1six:A, 1sjn:A, 1sjn:C, 1sjn:B, 1sm8:A, 1sm8:B, 1sm8:C, 1smc:A, 1smc:B, 1smc:C, 1snf:A, 1snf:C, 1snf:B
14 1f7r:A 133 122 0.3310 0.3534 0.3852 9.89e-15 1f7k:A, 1f7k:B, 1f7n:A, 1f7n:B, 1f7p:A, 1f7p:C, 1f7p:B, 1f7q:A, 1f7q:C, 1f7q:B
15 6mao:A 137 119 0.2887 0.2993 0.3445 6.71e-13
16 4aoo:A 143 143 0.3451 0.3427 0.3427 1.42e-11 4ao5:A, 4ao5:B, 4ao5:C, 4ao5:D, 4ao5:E, 4ao5:F, 4aoo:B, 4aoo:C, 4aoo:D, 4aoz:A, 4aoz:B, 4aoz:C, 4apz:1, 4apz:Y, 4apz:2, 4apz:3, 4apz:4, 4apz:5, 4apz:7, 4apz:6, 4apz:8, 4apz:9, 4apz:a, 4apz:A, 4apz:C, 4apz:B, 4apz:D, 4apz:E, 4apz:F, 4apz:G, 4apz:I, 4apz:H, 4apz:J, 4apz:K, 4apz:L, 4apz:M, 4apz:N, 4apz:O, 4apz:P, 4apz:R, 4apz:Q, 4apz:S, 4apz:U, 4apz:T, 4apz:V, 4apz:W, 4apz:X, 4apz:Z, 4apz:b, 4apz:d, 4apz:c, 4apz:e, 4apz:g, 4apz:f, 4apz:h, 4apz:j, 4apz:i, 4apz:k, 4apz:m, 4apz:l, 4b0h:A, 4b0h:B, 4b0h:C, 2xce:A, 2xce:B, 2xce:C, 2xce:D, 2xce:E, 2xce:F, 2xy3:A, 2xy3:B, 2xy3:C, 2xy3:D, 2xy3:E, 2xy3:F
17 2y8c:C 136 95 0.2535 0.2647 0.3789 1.10e-09 2y8c:B
18 3t64:A 153 62 0.1901 0.1765 0.4355 6.03e-09 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
19 3tp1:A 114 104 0.2535 0.3158 0.3462 3.76e-08 2d4n:A, 3tpn:A, 3tps:A, 3tpw:A, 3tpy:A, 3tq3:A, 3tq4:A, 3tq5:A, 3trl:A, 3trn:A, 3ts6:A, 3tsl:A, 3tta:A
20 6lj3:A 164 92 0.1690 0.1463 0.2609 0.007 6ky9:A, 6ky9:B, 6ky9:C, 6kz6:C, 6kz6:B, 6kz6:A, 6lis:A, 6lis:B, 6lis:C, 6lis:D, 6lis:F, 6lis:E, 6lj3:C, 6lj3:B
21 7kq3:A 825 73 0.1690 0.0291 0.3288 0.010 7kq3:B, 7kq3:C, 7kq3:D
22 4xjc:A 177 80 0.1408 0.1130 0.2500 0.049 4xjc:E, 4xjc:C, 4xjc:B, 4xjc:F, 4xjc:D
23 8wom:A 1217 86 0.1549 0.0181 0.2558 0.23 8woo:A, 8wp0:A
24 8em4:A 3818 123 0.2394 0.0089 0.2764 0.39 8em4:B
25 8em7:A 4378 123 0.2394 0.0078 0.2764 0.39 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
26 2vad:A 217 44 0.1127 0.0737 0.3636 1.2
27 5ymr:B 798 71 0.1408 0.0251 0.2817 1.6 5ymr:D, 5ymr:C, 5ymr:A
28 7x2b:A 217 54 0.1408 0.0922 0.3704 4.9
29 1h1l:B 519 73 0.1338 0.0366 0.2603 5.7 1h1l:D, 1qgu:B, 1qgu:D, 1qh1:B, 1qh1:D, 1qh8:B, 1qh8:D
30 1ksk:A 234 89 0.1408 0.0855 0.2247 5.8 1ksl:A, 1ksv:A
31 8byi:A 320 44 0.0915 0.0406 0.2955 7.6 8byi:B, 8byi:C, 8byi:D, 8byi:E
32 4i2y:A 381 56 0.1268 0.0472 0.3214 8.4 4i2y:B
33 8h69:B 754 49 0.0845 0.0159 0.2449 8.5 7ni0:B, 8pnq:B, 8r3k:B, 8r3l:B, 6rr7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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