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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSNIAGMIVFLDPGHNGANDASIGRQVPTGRGGTKNCQESGTATDDGYPEHSFTWDTTLRVRAALTALGVRTAMSRGNDN
ALGPCVDERAAMANSLRPHAIVSIHADGGPPTGRGFHVLYSSPPLNAAQSGPSVQFAKVMRDQLAASGIPPATYIGQGGL
NPRSDIAGLNLAQFPSVLVECGNMKNPVDSALMKSPEGRQKYADAIVRGIAGFLGSQS

The query sequence (length=218) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7agm:A 218 218 1.0000 1.0000 1.0000 4.19e-162 7agm:B
2 4m6g:A 214 214 0.7890 0.8037 0.8037 7.63e-131 4lq6:A, 4m6i:A, 4m6i:B
3 7ago:A 214 211 0.6697 0.6822 0.6919 1.69e-107 7agl:A
4 5j72:A 638 196 0.2110 0.0721 0.2347 3.45e-10 5j72:B
5 4rn7:A 186 216 0.2477 0.2903 0.2500 1.26e-07
6 8c0j:A 200 221 0.2844 0.3100 0.2805 1.12e-06 8c0j:C
7 7rag:B 197 220 0.2064 0.2284 0.2045 1.48e-06
8 5emi:A 180 210 0.2569 0.3111 0.2667 2.36e-06
9 7tj4:B 176 217 0.2431 0.3011 0.2442 1.25e-05 7tj4:D
10 8c2o:A 228 241 0.2661 0.2544 0.2407 1.68e-05 8c2o:B
11 4bin:A 348 231 0.2339 0.1466 0.2208 1.76e-05
12 1jwq:A 179 166 0.1835 0.2235 0.2410 0.002
13 7b3n:B 170 116 0.1514 0.1941 0.2845 0.002 7b3n:A, 7b3n:C, 7b3n:D, 7b3n:E
14 3ne8:A 226 50 0.0780 0.0752 0.3400 0.011
15 8dek:B 441 69 0.0826 0.0408 0.2609 0.27 8dek:A, 8df2:A, 8df2:B, 8df2:C, 8df2:D
16 6vwf:A 450 64 0.0780 0.0378 0.2656 9.7 6vwf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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