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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAY
YILATASNGYDPSFF

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3lw5:G 95 94 0.9158 0.9158 0.9255 5.20e-63 6igz:G, 2o01:G, 2wsc:G, 2wse:G, 2wsf:G, 4xk8:G, 4xk8:g
2 8wgh:G 98 95 0.9158 0.8878 0.9158 9.19e-62
3 7wg5:AG 99 96 0.9158 0.8788 0.9062 1.24e-60 7dkz:G, 8j6z:G, 8j7a:G, 8j7b:G, 5l8r:G, 7wfd:AG, 7wfe:BG, 7wg5:BG, 6yac:G, 6yez:G, 6zoo:G, 6zxs:G
4 5zji:G 97 94 0.8316 0.8144 0.8404 2.53e-57
5 8bcv:G 94 92 0.8316 0.8404 0.8587 2.12e-56
6 4y28:G 91 93 0.7789 0.8132 0.7957 4.48e-48
7 4rku:G 84 88 0.7263 0.8214 0.7841 2.17e-42
8 6l35:G 98 94 0.6211 0.6020 0.6277 2.42e-41 8htu:G, 7ksq:G, 7kux:G, 7xqp:G
9 7a4p:G 99 95 0.5368 0.5152 0.5368 5.42e-32 6zzx:G, 6zzy:G
10 7yca:G 95 87 0.4737 0.4737 0.5172 3.25e-28
11 7zq9:G 95 90 0.3789 0.3789 0.4000 2.17e-16 7d0j:G, 7dz7:G, 7dz8:G, 8h2u:G, 7zqd:G, 7zqd:G2
12 7zqc:G 80 87 0.3684 0.4375 0.4023 1.17e-14 7bgi:G, 7blx:G, 6jo5:G, 6jo6:G
13 8cmo:G 93 91 0.2947 0.3011 0.3077 1.15e-13
14 6ijo:G 70 87 0.3263 0.4429 0.3563 1.30e-12 7r3k:G
15 7a4p:K 86 80 0.3158 0.3488 0.3750 6.09e-07 6zzx:K, 6zzy:K
16 6sl5:G 101 96 0.3368 0.3168 0.3333 7.05e-07
17 6igz:K 80 83 0.3053 0.3625 0.3494 1.52e-06
18 8j6z:K 84 81 0.2842 0.3214 0.3333 1.00e-05 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
19 8bcv:K 88 83 0.3053 0.3295 0.3494 3.05e-05 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
20 8htu:K 81 84 0.2737 0.3210 0.3095 7.36e-05 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
21 8cmo:K 89 29 0.1684 0.1798 0.5517 1.74e-04
22 8wgh:K 83 82 0.2737 0.3133 0.3171 2.55e-04
23 7wfd:AK 65 34 0.1368 0.2000 0.3824 2.55e-04 7wfe:BK, 7wg5:AK, 7wg5:BK
24 7dz7:K 86 27 0.1684 0.1860 0.5926 4.34e-04 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
25 8j7a:K 56 31 0.1263 0.2143 0.3871 0.004
26 7yca:K 87 31 0.1789 0.1954 0.5484 0.089
27 8b4l:C 311 18 0.1053 0.0322 0.5556 1.5 8b4l:E, 8b4l:A, 8b4l:B, 8b4l:D, 8b4l:F, 8b4m:B, 8b4m:D, 8b4m:E, 8b4m:F
28 6sl5:K 84 72 0.2421 0.2738 0.3194 1.5
29 8wm6:K 69 31 0.1474 0.2029 0.4516 1.9 8wmj:K, 8wmv:K, 8wmw:K
30 4xk8:k 46 17 0.0947 0.1957 0.5294 2.4 4xk8:K
31 1nt4:A 391 30 0.1158 0.0281 0.3667 2.9 1nt4:B, 6rmr:A
32 3ntl:A 388 29 0.1158 0.0284 0.3793 4.4 3ntl:B
33 7taf:A 296 47 0.1579 0.0507 0.3191 5.4 5bnn:A, 5bnp:A, 6crp:A, 6cs3:A, 6cv1:A, 6cvb:A, 7ebr:A, 6mzi:A, 7tag:A, 6wdt:A, 4wm7:A
34 5odn:D 106 28 0.1053 0.0943 0.3571 5.4 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
35 5odp:G 100 16 0.0842 0.0800 0.5000 9.1 5odp:A
36 2cks:B 306 42 0.1368 0.0425 0.3095 9.5 2ckr:B, 2ckr:A, 2cks:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218