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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDS
VTILNSGEDKIEDILVLHLDRGKDYFLTISGNYLPSCFGTSLEALCRMKRPIRERPLQVPKEIWLLVDHLFKYACHQEDL
FQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDPRICRQVISQLPRCHRNV
FRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPPSDRQRAIQFLLGFLL

The query sequence (length=293) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qis:A 293 293 1.0000 1.0000 1.0000 0.0
2 1xa6:A 399 163 0.1331 0.0977 0.2393 2.91e-09
3 3cxl:A 402 172 0.1263 0.0920 0.2151 7.67e-07
4 1j0a:A 325 77 0.0922 0.0831 0.3506 0.012 1j0a:B, 1j0a:C, 1j0b:A, 1j0b:B, 1j0b:C, 1j0b:D, 1j0b:E, 1j0b:F, 1j0b:G, 1j0b:H, 1j0b:I, 1j0b:J, 1j0b:K, 1j0b:L, 1j0b:M, 1j0b:N, 1j0b:O, 1j0b:P, 1j0b:Q, 1j0b:R, 1j0b:S, 1j0b:T, 1j0b:U, 1j0b:V, 1j0b:W, 1j0b:X
5 7lz8:F 256 46 0.0546 0.0625 0.3478 0.18
6 5c2k:A 382 86 0.0717 0.0550 0.2442 0.51 5a0f:A, 1a2b:A, 6bc0:F, 6bca:F, 6bca:C, 6bcb:F, 5bwm:A, 5c4m:A, 1cc0:A, 1cc0:C, 1cxz:A, 4d0n:A, 1dpf:A, 5ez6:B, 4f38:A, 8fc7:E, 8fc7:F, 8fc7:G, 8fc7:H, 8fc9:E, 8fc9:F, 8fc9:G, 8fc9:H, 8fcb:E, 8fcb:F, 8fcb:G, 8fcb:H, 8fpw:A, 8fpx:A, 5fr1:A, 5fr2:A, 1ftn:A, 7g80:A, 7g81:A, 7g82:A, 7g83:A, 7g84:A, 7g85:A, 7g86:A, 7g87:A, 7g88:A, 7g89:A, 7g8a:A, 7g8b:A, 7g8c:A, 7g8d:A, 7g8e:A, 7g8f:A, 7g8g:A, 7g8h:A, 7g8i:A, 7g8j:A, 7g8k:A, 7g8l:A, 7g8m:A, 7g8n:A, 7g8o:A, 7g8p:A, 7g8q:A, 7g8r:A, 7g8s:A, 7g8u:A, 7g8v:A, 7g8w:A, 7g8x:A, 7g8y:A, 7g90:A, 7g92:A, 7g93:A, 7g94:A, 7g95:A, 7g96:A, 7g97:A, 7g99:A, 7g9i:A, 7g9j:A, 2gcn:A, 2gco:A, 2gco:B, 2gcp:A, 8gi3:A, 8gi6:A, 5hpy:B, 5hpy:F, 5irc:F, 5irc:D, 5jhh:B, 5jhh:F, 1kmq:A, 6kx2:A, 6kx3:A, 3kz1:E, 3kz1:F, 3lw8:A, 3lw8:B, 3lw8:C, 3lw8:D, 3lwn:A, 3lwn:B, 3lxr:A, 5m6x:B, 5m6x:I, 5m70:B, 5m70:G, 3msx:A, 1ow3:B, 7qsc:B, 7qsc:D, 7qtm:B, 7qtm:I, 6r3v:B, 1s1c:A, 1s1c:B, 8t1c:E, 3tvd:A, 3tvd:B, 1tx4:B, 7u2p:B, 6v6m:A, 6v6u:A, 6v6v:A, 7wza:A, 7wzc:A, 4xoi:A, 4xoi:C, 7xqv:A, 4xsg:A, 4xsh:A, 1z2c:A, 1z2c:C
7 2du3:A 534 56 0.0614 0.0337 0.3214 3.1 2du5:A, 2du6:A
8 2du4:A 466 56 0.0614 0.0386 0.3214 3.3 2du3:B, 2du5:B, 2du6:B
9 5ocu:K 333 100 0.0785 0.0691 0.2300 3.4 5ogc:K
10 7mq8:LN 671 64 0.0580 0.0253 0.2656 4.1 7mq9:LN, 7mqa:LN
11 3f2b:A 994 54 0.0580 0.0171 0.3148 4.3 3f2c:A, 3f2d:A
12 6f7c:F 281 51 0.0478 0.0498 0.2745 5.4 7zx2:F
13 7smc:C 347 71 0.0785 0.0663 0.3239 5.7 7smc:A, 7smd:A, 7sme:A, 7smf:A, 7smf:C, 4yoo:A, 4yos:A, 4yoz:A
14 6ig2:D 278 100 0.0785 0.0827 0.2300 5.7 6ig4:A, 6ig4:B
15 6mve:A 680 62 0.0717 0.0309 0.3387 5.9 6cgl:A, 6cgl:B, 6cgn:A, 6mt9:A, 6mv9:A, 6mv9:B, 6mw3:D, 6mw3:C, 6myx:C, 6myx:D, 6myx:I, 6myx:J
16 6s6z:A 1083 29 0.0375 0.0102 0.3793 6.1 6s6z:D, 6s6z:B, 6s6z:H, 6s6z:F, 6s6z:G, 6s6z:E, 6s6z:C, 6sd0:A, 6sd0:B, 6sd0:C, 6sd0:D
17 6s83:A 400 52 0.0683 0.0500 0.3846 6.3 6s83:B, 6s83:C, 6s83:D, 6s83:E, 6s83:F, 6s83:G, 6s83:H
18 5s54:F 322 51 0.0478 0.0435 0.2745 6.5 8a9t:F, 8a9z:F, 7cbz:F, 5sb9:F
19 3w3w:A 1028 61 0.0683 0.0195 0.3279 8.0 5h2v:A, 3w3x:A, 3w3y:A, 4zj7:A
20 2q9c:A 304 29 0.0375 0.0362 0.3793 8.6 2cnw:D, 2cnw:E, 2cnw:F, 2iyl:D, 2j7p:D, 2j7p:E, 2q9b:A, 2xkv:D
21 5xg3:B 374 110 0.0956 0.0749 0.2545 9.6 5h67:A, 5xg3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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