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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSDKPVAHVVANPQAEGQLQWLNRRANALLANGVELRDNQLVVPSEGLYLIYSQVLFKGQGCPSTHVLLTHTISRIAVSY
QTKVNLLSAIKSPCQRETPWYEPIYLGGVFQLEKGDRLSAEINRPDYLDFAESGQVYFGIIAL

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7jra:A 153 150 1.0000 0.9346 0.9533 1.79e-102 2az5:A, 2az5:B, 2az5:C, 2az5:D, 7jra:B, 7jra:C, 7kp9:A, 7kp9:B, 7kp9:C, 7kpa:A, 7kpa:B, 7kpa:C, 7kpb:A, 7kpb:B, 7kpb:C, 5mu8:A, 5mu8:B, 5mu8:C, 5mu8:D, 5mu8:F, 5mu8:G, 5mu8:H, 5mu8:I, 5mu8:J, 5mu8:K, 5mu8:L, 5mu8:M, 5mu8:N, 5mu8:O, 5mu8:Q, 5mu8:R, 5mu8:S, 5mu8:U, 5mu8:V, 5mu8:W, 5mu8:X, 5mu8:Y, 5mu8:Z, 5mu8:a, 5mu8:b, 5mu8:c, 5mu8:d, 5mu8:e, 5mu8:f, 5mu8:h, 5mu8:i, 5mu8:j, 5mu8:l, 5mu8:m, 5mu8:n, 5mu8:o, 5mu8:p, 5mu8:q, 5mu8:r, 5mu8:t, 5mu8:u, 5mu8:v, 6ooy:A, 6ooy:B, 6ooy:C, 6ooz:A, 6ooz:B, 6op0:A, 6op0:B, 7ta6:C, 7ta6:D, 7ta6:F, 7ta6:A, 7ta6:G, 4twt:A, 4twt:B, 4twt:D, 5uui:A, 6x81:A, 6x81:C, 6x81:B, 6x81:D, 6x81:E, 6x81:F, 6x82:A, 6x82:B, 6x82:C, 6x82:D, 6x82:E, 6x82:F, 6x83:A, 6x83:B, 6x83:C, 6x83:E, 6x83:F, 6x85:B, 6x85:C, 6x86:A, 6x86:B, 6x86:C, 6x86:D, 6x86:E, 6x86:F
2 7ta6:E 136 143 0.9301 0.9779 0.9301 8.51e-93 6ooz:C, 6op0:C, 7ta6:B, 7ta6:H, 6x83:D
3 7kp8:A 140 143 0.7692 0.7857 0.7692 1.81e-77 7kp8:B, 7kp8:C
4 3lkj:A 133 140 0.2797 0.3008 0.2857 2.64e-09 3lkj:B, 3lkj:C
5 3k48:A 137 106 0.2308 0.2409 0.3113 6.53e-04 3k48:D, 3k48:B
6 1kxg:A 144 117 0.2098 0.2083 0.2564 8.01e-04 1kxg:F, 1oqd:E, 1oqd:F, 1oqe:E, 1oqe:F, 1osg:A, 1osg:D, 1osg:B, 1osg:C, 1osg:E, 1osg:F, 4v46:AA, 4v46:AB, 4v46:AC, 4v46:AD, 4v46:AE, 4v46:AF, 4v46:AG, 4v46:AH, 4v46:AI, 4v46:AJ, 4v46:AK, 4v46:AL, 4v46:AM, 4v46:AN, 4v46:AO, 4v46:AP, 4v46:AQ, 4v46:AR, 4v46:AS, 4v46:AT, 4v46:AU, 4v46:AV, 4v46:AW, 4v46:AX, 4v46:AY, 4v46:AZ, 4v46:A0, 4v46:A1, 4v46:A2, 4v46:A3, 4v46:A4, 4v46:A5, 4v46:A6, 4v46:A7, 4v46:A8, 4v46:A9, 4v46:Aa, 4v46:Ab, 4v46:Ac, 4v46:Ad, 4v46:Ae, 4v46:Af, 4v46:Ag, 4v46:Ah, 4v46:Ai, 4v46:Aj, 4v46:Ak, 4v46:Al, 4v46:Am, 4v46:An, 4v46:Ao, 4v46:Ap, 4v46:Aq, 4v46:Ar, 4v46:As, 4v46:At, 4v46:Au, 4v46:Av, 4v46:Aw, 4v46:Ax, 3v56:A, 3v56:B, 3v56:C, 3v56:D, 3v56:E, 3v56:F
7 7ml1:X 156 19 0.0839 0.0769 0.6316 6.9
8 7y7b:b 176 29 0.0769 0.0625 0.3793 8.7 8wb4:6, 8wb4:P, 8xkl:P, 8xr6:1, 8xr6:7, 7y8a:b
9 6v42:A 466 68 0.1119 0.0343 0.2353 8.7 6v42:B, 6v43:A, 6v43:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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