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BioLiP
>protein
PSCKHCKDDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gy5:A 215 65 0.9559 0.3023 1.0000 2.42e-44 3ask:A, 3ask:B, 3ask:D, 3asl:A, 3db3:A, 7fb7:B, 4gy5:B, 6iiw:A, 2lgg:A, 2lgk:A, 2lgl:A, 4qqd:A, 4qqd:B, 3shb:A, 3sou:A, 3sou:B, 3sow:A, 3sow:B, 3sox:A, 3sox:B, 3t6r:B, 3t6r:A, 8wms:A, 5xpi:A, 5yy9:A, 5yy9:B, 3zvy:A, 3zvy:B, 3zvz:B
2 7xga:A 126 68 0.7206 0.3889 0.7206 4.96e-34 6vfo:A
3 2e6s:A 77 65 0.5000 0.4416 0.5231 8.18e-23
4 4tvr:A 222 63 0.4559 0.1396 0.4921 6.29e-17
5 5vab:A 54 49 0.3529 0.4444 0.4898 1.05e-12
6 2mny:A 55 47 0.3529 0.4364 0.5106 2.61e-10 2mnz:A
7 1f62:A 51 47 0.3235 0.4314 0.4681 4.82e-10
8 7klo:A 59 47 0.3382 0.3898 0.4894 1.37e-09 7klr:A
9 2miq:A 94 46 0.3088 0.2234 0.4565 2.95e-09
10 5szb:A 115 47 0.3088 0.1826 0.4468 1.39e-08 5i3l:A, 5i3l:B, 2kwj:A, 2kwk:A, 2kwn:A, 2kwo:A, 5szc:A
11 5b79:A 118 46 0.2941 0.1695 0.4348 1.05e-07 5vdc:A
12 2e6r:A 92 46 0.3088 0.2283 0.4565 5.96e-07
13 2yql:A 56 35 0.2500 0.3036 0.4857 6.92e-07
14 2ysm:A 111 48 0.2794 0.1712 0.3958 9.69e-07
15 2ysm:A 111 47 0.2206 0.1351 0.3191 0.082
16 2puy:B 60 35 0.2500 0.2833 0.4857 1.23e-06 2puy:A
17 6oie:B 111 52 0.3382 0.2072 0.4423 1.31e-06 6oie:A, 5u2j:B, 5u2j:A
18 6oie:B 111 43 0.1912 0.1171 0.3023 5.3 6oie:A, 5u2j:B, 5u2j:A
19 6fhq:A 58 50 0.2647 0.3103 0.3600 4.46e-06 6fhq:B, 6fi1:A, 6fi1:B, 4qf3:A, 4qf3:B
20 9atn:A 98 48 0.2500 0.1735 0.3542 6.33e-06
21 9atn:A 98 47 0.2206 0.1531 0.3191 0.23
22 6ryr:W 708 52 0.3235 0.0311 0.4231 1.02e-05 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
23 6guu:B 204 57 0.3382 0.1127 0.4035 1.12e-05 6guu:A
24 1mm3:A 61 58 0.3382 0.3770 0.3966 1.27e-05
25 1fp0:A 88 58 0.3382 0.2614 0.3966 1.76e-05
26 4lk9:A 126 40 0.2647 0.1429 0.4500 1.82e-05 5b75:A, 5b76:A, 5b77:A, 5b78:A, 4ljn:A, 4lka:A, 4llb:A, 4llb:B, 2ln0:A, 6lsb:A, 3v43:A
27 6q3m:C 219 52 0.3235 0.1005 0.4231 2.11e-05 6q3m:A, 6q3m:B
28 8hxx:N 375 36 0.2500 0.0453 0.4722 2.66e-05 8hxy:N, 8hy0:N, 8i3f:B, 8jho:N, 8tof:G, 8w9c:E, 8w9d:E, 8w9e:E, 8w9f:E
29 2l5u:A 61 43 0.2353 0.2623 0.3721 3.93e-05
30 4q6f:A 56 47 0.2647 0.3214 0.3830 4.04e-05 6fap:A, 6fap:B, 6fap:C, 6fap:D, 6fhu:A, 6fhu:B, 6fhu:D, 6fhu:C, 6fi0:A, 6fi0:B, 6fi0:C, 6fi0:D, 6fkp:A, 6fkp:D, 6fkp:C, 6fkp:B, 4q6f:B, 4q6f:C, 4q6f:D, 4qf2:A, 4qf2:B, 4qf2:C, 4qf2:D, 5t8r:D, 5t8r:A, 5t8r:B, 5t8r:C
31 8ihn:M 357 36 0.2500 0.0476 0.4722 4.21e-05 8kd4:E
32 7duf:A 62 47 0.2206 0.2419 0.3191 5.56e-05 7duf:B
33 2ke1:A 66 39 0.2500 0.2576 0.4359 8.00e-05 2kft:A, 1xwh:A
34 7yi2:D 321 36 0.2500 0.0530 0.4722 9.63e-05 7yi0:D, 7yi3:D, 7yi4:D, 7yi5:D
35 8kd6:E 301 36 0.2500 0.0565 0.4722 1.07e-04 8kd2:E
36 5hh7:A 192 50 0.2941 0.1042 0.4000 3.98e-04
37 2ro1:A 189 52 0.3088 0.1111 0.4038 5.66e-04
38 7yi0:F 120 34 0.2353 0.1333 0.4706 0.001
39 8w9c:F 156 34 0.2353 0.1026 0.4706 0.002 8hxx:P, 8hy0:P, 8jho:P, 8w9d:F, 8w9e:F, 8w9f:F
40 8bpb:C 126 53 0.2794 0.1508 0.3585 0.002 8bpc:C
41 8bpa:C 213 31 0.2059 0.0657 0.4516 0.002 8c60:C
42 8bpa:C 213 32 0.2206 0.0704 0.4688 0.084 8c60:C
43 2k16:A 75 52 0.2353 0.2133 0.3077 0.003 5c13:A, 5c13:C, 5c13:E, 5c13:G, 2k17:A, 5wxg:A, 5wxh:C, 5wxh:A, 5xmy:A, 5xmy:C
44 8i02:F 235 48 0.2794 0.0809 0.3958 0.007
45 2yt5:A 66 41 0.1765 0.1818 0.2927 0.011
46 6ieu:A 170 51 0.3088 0.1235 0.4118 0.015 6iet:A
47 8i02:G 284 33 0.2206 0.0528 0.4545 0.017 8ifg:P
48 8i02:G 284 42 0.2353 0.0563 0.3810 0.046 8ifg:P
49 3o36:A 184 41 0.2353 0.0870 0.3902 0.046 7b9x:A, 5h1t:A, 5h1t:B, 5h1t:C, 5h1t:D, 5h1u:B, 5h1u:A, 5h1u:C, 5h1u:D, 5h1v:A, 5h1v:B, 3o33:A, 3o33:B, 3o33:C, 3o33:D, 3o34:A, 3o35:B, 3o35:A, 3o36:B, 3o37:A, 3o37:B, 3o37:C, 3o37:D, 4yab:A, 4yab:B, 4yad:A, 4yad:B, 4yat:A, 4yat:B, 4yax:A, 4yax:B, 4ybm:A, 4ybm:B, 4ybs:A, 4ybt:A, 4yc9:A, 4zql:A, 4zql:B
50 3u5m:E 173 41 0.2500 0.0983 0.4146 0.067
51 3u5o:C 195 41 0.2500 0.0872 0.4146 0.070 8bd8:A, 8bd9:A, 8bdy:A, 5mr8:A, 3u5m:A, 3u5m:B, 3u5m:C, 3u5m:D, 3u5m:F, 3u5m:G, 3u5m:H, 3u5m:I, 3u5m:K, 3u5m:J, 3u5m:L, 3u5n:A, 3u5n:B, 3u5o:A, 3u5o:B, 3u5o:D, 3u5o:E, 3u5o:F, 3u5o:G, 3u5o:H, 3u5p:A, 3u5p:B, 3u5p:C, 3u5p:D, 3u5p:E, 3u5p:F, 3u5p:G, 3u5p:H, 7zdd:A
52 2l43:A 80 49 0.2500 0.2125 0.3469 0.099 2ku3:A
53 5xfr:A 309 41 0.1765 0.0388 0.2927 0.10 5xfr:B
54 4e0u:A 408 53 0.2353 0.0392 0.3019 0.24 4e0u:B, 7xvj:A, 7xvj:B, 7xvj:C, 7xvj:D, 7y3v:A, 7y3v:B, 7y3v:C, 7y3v:D
55 7ebk:A 183 51 0.2794 0.1038 0.3725 0.28 7ebj:A
56 4njg:A 209 29 0.1618 0.0526 0.3793 0.29 4njg:B, 4njh:A, 4njh:B, 4nji:A, 4nji:B, 4njj:A, 4njj:B, 4njk:A, 4njk:B
57 1we9:A 64 51 0.2206 0.2344 0.2941 0.57
58 5y20:A 52 47 0.2059 0.2692 0.2979 1.0
59 1wes:A 71 28 0.1765 0.1690 0.4286 1.1 2g6q:A
60 7d87:A 202 49 0.2206 0.0743 0.3061 1.4 7d86:A, 7d8a:A
61 6j2p:A 98 34 0.1912 0.1327 0.3824 2.1 6j2p:B, 6j2p:D, 6j2p:C
62 5b73:A 313 31 0.2059 0.0447 0.4516 2.2 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
63 6qmm:B 280 27 0.1176 0.0286 0.2963 2.6 6qmm:A
64 8f6t:A 428 16 0.1176 0.0187 0.5000 4.6
65 1v33:A 346 31 0.1765 0.0347 0.3871 4.6 1v34:A
66 2qic:A 51 34 0.2059 0.2745 0.4118 4.7
67 4gat:A 66 27 0.1176 0.1212 0.2963 4.9 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
68 6u04:A 168 51 0.2500 0.1012 0.3333 5.1 5erc:A
69 5yc3:A 60 49 0.2059 0.2333 0.2857 5.3 5yc4:A
70 2lri:C 66 49 0.2500 0.2576 0.3469 5.6
71 2lv9:A 80 45 0.1912 0.1625 0.2889 6.7 4l58:A
72 1qxw:A 249 19 0.1471 0.0402 0.5263 9.0 1qxy:A, 1qxz:A
73 8j62:C 127 27 0.1618 0.0866 0.4074 9.3 8e40:B, 8j62:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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