Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSAPSREVVKKNTSSKKSDAAPASADPAKAKKKKSPTGNEAALKNKNFNKDVAPPQSTATPFDRHSRTGKTDSKKKLQQG
WGQSDKRELEGEVEGTEDAEAELEAEAEENDES

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8c3a:i 121 108 0.9115 0.8512 0.9537 1.23e-66 8c3a:CL, 8cq7:i, 8cq7:CL, 8cqw:i, 8cqw:CL, 8cre:i, 8cre:CL, 8oeq:i, 8oeq:CL, 7pzy:i, 7q08:i, 7q0f:i, 7q0p:i, 7q0r:i
2 5dgv:SM 159 98 0.4602 0.3270 0.5306 8.19e-22 5fci:SM, 5fcj:SM, 5i4l:SM, 5lyb:SM, 5tga:SM, 5tgm:SM, 4v88:Ah, 4v8y:A7, 4v8z:A7
3 5dat:SM 159 98 0.4513 0.3208 0.5204 1.38e-21 8bn3:SM, 5dc3:SM, 6hhq:i, 6hhq:sM, 8k2d:CS, 7mpi:Bh, 7mpj:Bh, 7n8b:Bh, 5ndg:SM, 5ndg:sM, 5ndv:SM, 5ndw:SM, 5ndw:sM, 5on6:i
4 5dge:SM 159 100 0.4690 0.3333 0.5300 3.16e-21 5dgf:SM, 5mei:i, 5obm:SM, 5obm:sM, 5tbw:i, 4u3m:SM, 4u3n:SM, 4u3u:SM, 4u4n:SM, 4u4o:SM, 4u4q:SM, 4u4r:SM, 4u4u:SM, 4u4y:SM, 4u4z:SM, 4u50:SM, 4u51:SM, 4u52:SM, 4u53:SM, 4u55:SM, 4u56:SM, 4u6f:SM
5 5dgv:sM 104 54 0.2566 0.2788 0.5370 8.57e-09
6 5dat:sM 104 54 0.2478 0.2692 0.5185 2.80e-08 5dc3:sM
7 5fci:sM 104 54 0.2478 0.2692 0.5185 3.18e-08 5fcj:sM, 5i4l:sM, 5lyb:sM, 5mei:sM, 5on6:sM, 5tbw:sM, 5tga:sM, 4v88:Ch
8 5dge:sM 104 54 0.2478 0.2692 0.5185 4.47e-08 5dgf:sM, 5ndv:sM, 5tgm:sM, 4u3m:sM, 4u3n:sM, 4u3u:sM, 4u4n:sM, 4u4o:sM, 4u4q:sM, 4u4r:sM, 4u4u:sM, 4u4y:sM, 4u4z:sM, 4u50:sM, 4u51:sM, 4u52:sM, 4u53:sM, 4u55:sM, 4u56:sM, 4u6f:sM
9 5lsu:A 231 91 0.2124 0.1039 0.2637 0.73 7cro:I, 7e8d:K, 5lsu:B
10 7old:B 129 74 0.2035 0.1783 0.3108 1.7
11 6hac:A 342 32 0.1150 0.0380 0.4062 2.8 6hae:A, 6hae:K, 6hav:A
12 8u4z:A 313 29 0.1062 0.0383 0.4138 7.7

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218