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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PSALHLIFERCKLNLVEFTAQDVYQICTTAYNMDTLGMLQDPDFMRGLHDAFRRSDQTVISPFQANLIADTFRKVGINSM
PKEVSVPEEDAISPESLILVLRNMNITKQRDERKINEVLKLMFPILDEFSPTQLSLTVTELARLKSTNADFVGKLAKRIM
EYNDDLSALDISSAAVSLAYCPGISHNILYRMMQIVEERMGEFQPEDYINVLHALNTLGPKFVNTFRKIVECGLQHVENM
DAVTLTNYMVCFSTMDYKQREHIDIYADALVEVATDLSEKDLVMAFIALQRLRLLSDTMFGTMASCVIRYAAKMDPRNIA
PIMDICSTVPHASDHLMKVLMDRAVECTRILTANQLGDILDILGLYPPAREHPLVQLFGKQARLRLDLMGPDALANATRG
LANLGYADPEYYAQAAETGFRYGFKDWTLLEPMLMGLSITGQCPPTMVRVLGSHIAPMARSMSLMEIERANRYLRRLGCE
DDFVYKAMASRVLQFVKEVTPEMPEDLQVLLQR

The query sequence (length=513) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fnc:8 516 513 1.0000 0.9942 1.0000 0.0 8fnf:8, 8fni:8, 8fnk:8
2 8fni:6 453 267 0.0897 0.1015 0.1723 0.002 8fn6:6, 8fnc:6, 8fnf:6, 8fnk:6
3 8fni:6 453 321 0.1111 0.1258 0.1776 0.010 8fn6:6, 8fnc:6, 8fnf:6, 8fnk:6
4 8fni:6 453 280 0.1111 0.1258 0.2036 0.024 8fn6:6, 8fnc:6, 8fnf:6, 8fnk:6
5 8e6n:A 398 40 0.0292 0.0377 0.3750 3.4 8e60:A, 8e6h:A, 8e6i:A, 8e6l:A
6 8fpi:A 1357 110 0.0526 0.0199 0.2455 3.7
7 4ato:A 168 130 0.0604 0.1845 0.2385 3.8
8 8ciw:A 555 66 0.0409 0.0378 0.3182 4.7 8ciw:B
9 2hih:A 387 28 0.0253 0.0336 0.4643 4.9 2hih:B
10 5jip:A 317 42 0.0351 0.0568 0.4286 5.2 5jip:B
11 2rgo:A 557 91 0.0585 0.0539 0.3297 5.3 2rgh:A
12 1xkw:A 655 89 0.0468 0.0366 0.2697 5.4
13 2mb0:B 95 57 0.0370 0.2000 0.3333 5.6
14 8djk:A 245 53 0.0351 0.0735 0.3396 6.3 8djm:A
15 5l8r:4 198 71 0.0292 0.0758 0.2113 6.7 7dkz:4, 8j6z:4, 8j7a:4, 8j7b:4, 3lw5:4, 2o01:4, 4rku:4, 7wfd:A4, 7wg5:A4, 2wsc:4, 2wse:4, 2wsf:4, 4xk8:4, 4xk8:9, 4y28:4, 6yac:4, 6yez:4, 6zoo:4, 6zxs:4
16 1dl5:A 317 79 0.0448 0.0726 0.2911 7.6 1dl5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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