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BioLiP
>protein
PSAFFLFCSEYRPKIKGEHPGIGDVAKKLGEMWNNT

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6cik:N 90 38 1.0000 0.4000 0.9474 8.37e-21 6cg0:N, 6cim:N
2 6cij:N 133 38 1.0000 0.2707 0.9474 1.51e-20 5zdz:N, 5ze1:N, 5ze2:N
3 2gzk:A 159 38 1.0000 0.2264 0.9474 1.67e-20 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
4 5ze0:N 118 36 0.9167 0.2797 0.9167 2.23e-17 1ckt:A
5 1j5n:A 93 34 0.4444 0.1720 0.4706 3.61e-04
6 1e7j:A 74 34 0.4444 0.2162 0.4706 8.62e-04 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
7 5jh0:D 157 36 0.3333 0.0764 0.3333 0.13 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
8 2q6v:A 370 37 0.3611 0.0351 0.3514 1.9 3cv3:A
9 6ohr:A 576 25 0.2500 0.0156 0.3600 3.4 6ohr:B, 6ohr:C, 6ohr:D, 6ohr:E, 6u8z:A
10 6wo1:A 551 28 0.3056 0.0200 0.3929 6.0
11 1pie:A 388 27 0.3056 0.0284 0.4074 6.1
12 7ajt:UR 482 27 0.2500 0.0187 0.3333 7.1 7aju:UR, 7d4i:B8, 7d5s:B8, 7d5t:B8, 7d63:B8, 6ke6:B8, 6lqp:B8, 6lqq:B8, 6lqr:B8, 6lqs:B8, 6lqt:B8, 6lqu:B8, 6lqv:B8, 6nd4:S, 7suk:LS, 5wlc:LS, 6zqa:UR, 6zqb:UR, 6zqc:UR, 6zqd:UR
13 5h59:A 311 37 0.3889 0.0450 0.3784 7.3 5h5j:A, 5h5j:C, 1jb9:A, 3lo8:A, 3lvb:A, 5vw2:A, 5vw3:A, 5vw4:A, 5vw5:A, 5vw6:A, 5vw7:A, 5vw8:A, 5vw9:A, 5vwa:A, 5vwb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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