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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PRYLQATTERFAVAGSFTISRGTRTHADVVTCTIRDGSFTGIGECVPYPRYGESIEGVTADIEAMADRVAAGLTRQELQQ
VMKPGAARNAVDCALWDLEAKMSGKRAAEQVLGQPAQPLVTAYTISLADPDTMAAKTAENAGRPLLKIKTGTADDEARLR
AVRAAAPEARIIIDANEGWNDDNIEYYLKLAAELKISLIEQPLPAGKDAMLARIEHPVLICADESVHSTEDLAGLRDRYD
AINIKLDKTGGLTEALVMKAEAERLGFTIMVGCMLGTSLGMAPAVLVAQGTAFADLDGPLLLAEDRDPGLVYEGSLVYPA
RPELWG

The query sequence (length=326) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gfi:C 327 326 1.0000 0.9969 1.0000 0.0 4gfi:A, 4gfi:B, 4gfi:D
2 3ijq:A 337 313 0.3221 0.3116 0.3355 2.34e-37 3iji:A, 3iji:B, 3ijl:A, 3ijl:B, 3ijq:B
3 3q45:A 368 325 0.3006 0.2663 0.3015 7.89e-25 3q45:B, 3q45:C, 3q45:D, 3q45:E, 3q45:F, 3q45:G, 3q45:H, 3q45:I, 3q4d:A, 3q4d:B, 3q4d:C, 3q4d:D, 3q4d:E, 3q4d:F, 3q4d:G, 3q4d:H, 3q4d:I
4 1jpm:A 359 356 0.3558 0.3231 0.3258 1.29e-23 1jpm:B, 1jpm:C, 1jpm:D, 1tkk:A, 1tkk:B, 1tkk:C, 1tkk:D, 1tkk:E, 1tkk:F, 1tkk:G, 1tkk:H
5 3jva:B 354 294 0.2699 0.2486 0.2993 1.10e-19 3jva:A, 3jva:C, 3jva:D, 3jva:E, 3jva:F, 3jva:G, 3jva:H, 3jw7:A, 3jw7:B, 3jw7:C, 3jw7:D, 3jw7:E, 3jw7:F, 3jw7:G, 3jw7:H, 3jzu:A, 3jzu:B, 3jzu:C, 3jzu:D, 3jzu:E, 3jzu:F, 3jzu:G, 3jzu:H, 3k1g:A, 3k1g:B, 3k1g:C, 3k1g:D, 3k1g:E, 3k1g:F, 3k1g:G, 3k1g:H, 3kum:A, 3kum:B, 3kum:C, 3kum:D, 3kum:E, 3kum:F, 3kum:G, 3kum:H
6 3r11:B 364 241 0.2393 0.2143 0.3237 1.44e-18 3r0u:A, 3r10:A, 3r11:A, 3r1z:A, 3r1z:B
7 2p88:A 369 234 0.2147 0.1897 0.2991 2.21e-17 2p88:B, 2p88:C, 2p88:D, 2p88:E, 2p88:F, 2p88:G, 2p88:H, 2p8b:A, 2p8c:A
8 3i6t:B 364 262 0.2301 0.2060 0.2863 2.66e-16 3i6t:A, 3i6t:C, 3i6t:D
9 1nu5:A 369 215 0.2055 0.1816 0.3116 8.52e-15
10 3rit:A 354 347 0.3252 0.2994 0.3055 5.91e-14 3rit:B, 3rit:C, 3rit:D, 3rit:E, 3ro6:B, 3ro6:A, 3ro6:C, 3ro6:D, 3ro6:E, 3ro6:F
11 2zad:A 344 328 0.2607 0.2471 0.2591 7.45e-14 3deq:A, 3deq:B, 3deq:C, 3deq:D, 3der:A, 3der:B, 3der:C, 3der:D, 3des:A, 3des:B, 3des:C, 3des:D, 3dfy:A, 3dfy:B, 3dfy:C, 3dfy:D, 3dfy:E, 3dfy:F, 3dfy:G, 3dfy:H, 3dfy:I, 3dfy:J, 3dfy:K, 3dfy:L, 3dfy:M, 3dfy:N, 3dfy:O, 3dfy:P, 2zad:B, 2zad:C, 2zad:D
12 3fvd:B 367 306 0.2638 0.2343 0.2810 9.96e-13 3fvd:A
13 3dg6:A 366 279 0.2331 0.2077 0.2724 2.00e-12 3dg3:A, 3dg7:A, 3dg7:B, 3dg7:C, 3dg7:D
14 3i6e:A 356 250 0.2239 0.2051 0.2920 3.79e-12 3i6e:B, 3i6e:C, 3i6e:D, 3i6e:E, 3i6e:F, 3i6e:G, 3i6e:H
15 1wuf:A 371 303 0.2331 0.2049 0.2508 5.12e-12 1wuf:B
16 4mgg:A 369 244 0.2147 0.1897 0.2869 6.17e-12 4mgg:B, 4mgg:C, 4mgg:D, 4mgg:E, 4mgg:F, 4mgg:G, 4mgg:H
17 1f9c:A 360 325 0.2945 0.2667 0.2954 3.00e-11 1f9c:B, 1muc:A, 1muc:B, 2muc:A, 2muc:B, 3muc:A, 3muc:B
18 3fv9:C 374 305 0.2546 0.2219 0.2721 5.66e-11 3fv9:A, 3fv9:E, 3fv9:F, 3fv9:B
19 2chr:A 370 237 0.2147 0.1892 0.2954 1.35e-10
20 3i4k:A 370 339 0.2853 0.2514 0.2743 3.22e-10 3i4k:B, 3i4k:C, 3i4k:D, 3i4k:E, 3i4k:F, 3i4k:G, 3i4k:H
21 2qvh:A 311 153 0.1442 0.1511 0.3072 9.96e-10 2qvh:B
22 3mwc:A 388 316 0.2761 0.2320 0.2848 1.20e-09
23 4m0x:A 369 254 0.2117 0.1870 0.2717 3.79e-09 4m0x:B
24 3fcp:A 356 347 0.2822 0.2584 0.2651 5.69e-09 3fcp:B, 3fcp:C, 3fcp:D, 3fcp:E, 3fcp:F, 3fcp:G, 3fcp:H
25 2ggh:C 370 222 0.1963 0.1730 0.2883 2.16e-08 2ggh:A, 2ggh:B, 2ggh:D, 1xpy:A, 1xpy:B, 1xpy:C, 1xpy:D, 1xs2:A, 1xs2:B, 1xs2:C, 1xs2:D
26 4h19:A 372 229 0.2239 0.1962 0.3188 2.77e-08 4h19:B, 4h19:C, 4h19:D, 4h19:F, 4h19:E, 4h19:G, 4h19:H, 4h19:I, 4h19:K, 4h19:L, 4h19:M, 4h19:N, 4h19:P, 4h19:J, 4h19:O
27 3my9:A 357 203 0.1810 0.1653 0.2906 6.68e-08
28 1fhv:A 322 275 0.2147 0.2174 0.2545 6.63e-07 1r6w:A
29 2ps2:A 361 210 0.1534 0.1385 0.2381 9.60e-07 2ps2:B, 2ps2:C, 2ps2:D
30 4izg:A 369 177 0.1411 0.1247 0.2599 6.08e-06 4e8g:A, 4e8g:B, 4izg:B, 4j1o:A, 4j1o:B
31 4hpn:A 378 192 0.1595 0.1376 0.2708 2.14e-05 4ggb:A
32 3cb3:A 373 199 0.1779 0.1555 0.2915 2.60e-05 3cb3:B, 3cb3:C, 3cb3:D, 2og9:A, 2og9:B
33 3tte:A 361 145 0.1258 0.1136 0.2828 3.54e-05 3toy:A, 3toy:B, 3toy:C, 3toy:D, 3tte:B
34 2pmq:B 374 177 0.1258 0.1096 0.2316 1.25e-04 4h2h:A, 4h2h:B, 4h2h:C, 4h2h:D, 4h2h:E, 4h2h:F, 4h2h:G, 4h2h:H, 2pmq:A
35 3ozm:A 386 209 0.1718 0.1451 0.2679 1.88e-04 3op2:A, 3op2:B, 3ozm:B, 3ozm:C, 3ozm:D, 3ozm:E, 3ozm:F, 3ozm:G, 3ozm:H, 3ozy:A, 3ozy:B
36 3bjs:B 376 189 0.1595 0.1383 0.2751 2.44e-04 3bjs:A
37 1yey:C 435 167 0.1472 0.1103 0.2874 0.001 2hne:A, 2hne:B, 2hne:C, 2hne:D, 2hxt:A, 2hxu:A, 1yey:A, 1yey:B, 1yey:D
38 4a6g:A 368 305 0.2423 0.2147 0.2590 0.004 4a6g:B, 4a6g:C, 4a6g:D, 5fjo:A, 5fjo:B, 5fjp:A, 5fjp:B, 5fjp:C, 5fjp:D, 5fjr:A, 5fjr:B, 5fjr:C, 5fjr:D, 5fjt:A, 5fjt:B, 5fjt:C, 5fjt:D, 5fju:A, 5fju:B, 5fju:C, 5fju:D, 7s8w:A, 7s8w:B, 7s8w:C, 7s8w:D, 1sja:A, 1sja:B, 1sja:C, 1sja:D, 1sjb:A, 1sjb:B, 1sjb:C, 1sjb:D, 1sjc:A, 1sjc:B, 1sjc:C, 1sjc:D, 1sjd:A, 1sjd:B, 1sjd:C, 1sjd:D
39 3sqs:A 386 215 0.1626 0.1373 0.2465 0.005
40 5olc:C 351 226 0.1656 0.1538 0.2389 0.006 5olc:D, 5olc:F, 5olc:G, 5olc:H
41 2pp1:A 395 125 0.1196 0.0987 0.3120 0.007 2pp1:B, 2pp1:C, 2pp1:D, 2pp1:E, 2pp1:F, 2pp3:A, 2pp3:B, 2pp3:C
42 3stp:A 390 215 0.1656 0.1385 0.2512 0.013
43 3ck5:A 357 159 0.1319 0.1204 0.2704 0.070 3ck5:B, 3ck5:C, 3ck5:D
44 2rdx:A 369 250 0.1902 0.1680 0.2480 0.073 2rdx:B, 2rdx:C, 2rdx:D, 2rdx:E, 2rdx:F, 2rdx:G, 2rdx:H
45 4a35:A 441 115 0.1074 0.0794 0.3043 0.088
46 3sjn:A 373 183 0.1411 0.1233 0.2514 0.099 3sjn:B
47 6zhk:A 438 73 0.0736 0.0548 0.3288 0.20 6zhk:B
48 3t8q:B 369 135 0.1104 0.0976 0.2667 0.30 3t8q:A
49 8a8w:D 577 35 0.0521 0.0295 0.4857 0.37 8a8u:B, 8a8u:C, 8a8u:D, 8a8u:E, 8a8u:A, 8a8v:B, 8a8v:C, 8a8v:D, 8a8v:E, 8a8v:A, 8a8w:A, 8a8w:B, 8a8w:C, 8a8w:E
50 8xon:O 593 35 0.0491 0.0270 0.4571 0.38 8xon:S, 8xon:R, 8xon:Q, 8xon:P, 8xon:T, 8xoo:R, 8xoo:Q, 8xoo:P, 8xoo:T, 8xoo:S
51 5xd8:B 367 126 0.1104 0.0981 0.2857 0.39 5xd7:A, 5xd8:A, 5xd9:A
52 8xoo:O 572 35 0.0491 0.0280 0.4571 0.40
53 8a8w:F 552 35 0.0521 0.0308 0.4857 0.43 8a8u:F, 8a8v:F
54 3tcs:B 367 41 0.0552 0.0490 0.4390 0.54 3tcs:A
55 2dw6:A 388 217 0.1656 0.1392 0.2488 0.58 2dw6:B, 2dw6:C, 2dw6:D, 2dw7:A, 2dw7:B, 2dw7:C, 2dw7:D, 2dw7:E, 2dw7:F, 2dw7:G, 2dw7:H, 2dw7:I, 2dw7:J, 2dw7:K, 2dw7:L, 2dw7:M, 2dw7:N, 2dw7:O, 2dw7:P, 1tzz:A, 1tzz:B
56 4dn1:A 389 155 0.1534 0.1285 0.3226 0.75 4dn1:B
57 3r25:B 399 223 0.1472 0.1203 0.2152 0.87 3r25:A, 3r25:C, 3r25:D, 3r25:E, 3r25:F, 3r25:G, 3r25:H, 3sbf:A, 3sbf:B, 3sbf:C, 3sbf:D
58 3v3w:A 397 65 0.0552 0.0453 0.2769 1.4 3v4b:A
59 5fog:D 284 142 0.1074 0.1232 0.2465 1.8 5fog:A, 5fog:B, 5fog:C, 5fol:A, 5fom:A
60 4h1z:B 388 72 0.0767 0.0644 0.3472 2.1 4h1z:A, 4h1z:C, 4h1z:D, 4h1z:E, 4h1z:F, 4h1z:G, 4h1z:H
61 4hcd:A 384 141 0.1196 0.1016 0.2766 2.9 4hch:A, 4hch:B, 4hcl:A, 4hcl:B, 4mmw:A, 4mmw:B, 1rvk:A
62 5t5h:L 65 28 0.0368 0.1846 0.4286 3.0
63 3jzj:A 388 38 0.0521 0.0438 0.4474 3.7 3k00:A, 3k02:A
64 2pzi:A 654 68 0.0552 0.0275 0.2647 3.8 2pzi:B, 7q52:AAA, 4y0x:A, 4y12:A
65 4fi4:A 407 66 0.0644 0.0516 0.3182 5.9 4fi4:B, 4fi4:C
66 4gme:A 403 65 0.0675 0.0546 0.3385 6.0 4gme:C, 3vcn:A, 3vcn:C
67 4z17:A 424 53 0.0613 0.0472 0.3774 6.6 4yws:A, 4z17:B, 4z1y:A, 4z1y:B
68 4hnl:A 401 43 0.0460 0.0374 0.3488 6.7
69 3ndb:B 420 92 0.0736 0.0571 0.2609 6.8 2v3c:C, 2v3c:D, 4xco:D
70 3n4e:A 368 135 0.1104 0.0978 0.2667 8.0 3n4e:B
71 2qjj:A 402 34 0.0460 0.0373 0.4412 8.3 4k1w:A, 4k1w:B, 4k1w:C, 4k1w:D, 4k8g:A, 2qjj:B, 2qjj:C, 2qjj:D, 2qjm:A, 2qjm:B, 2qjm:C, 2qjm:D, 2qjn:A, 2qjn:B, 2qjn:C, 2qjn:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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