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BioLiP
>protein
PRYLKGALKDVVQLSLRRPSLRASRQRPIISLRERILEFNKRNITAIIAVYKRKSPSGLDVERDPIEYAKFMERYAVGLV
ILTEEKYFNGSYEDLRKIASSVSIPILMWDFIVKESQIDDAYNLGADTVGLIVKILTERELESLLEYARSYGMEPAIVIN
DEEDLDIALRIGARIIIISSRDLETLEINKENQRKLISMIPSNVVKVAASGISERNEIEELRKLGVNAFEIGSSLMRNPE
KIKELIL

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3nz1:A 249 247 0.9312 0.9237 0.9312 8.43e-163 4a29:A, 4a2s:A, 1a53:A, 8foq:A, 1igs:A, 4iww:A, 4iww:B, 1juk:A, 5k7j:A, 5k7j:B, 1lbf:A, 1lbl:A, 6nw4:A, 4ou1:A, 3ud6:A, 3uxd:A, 3uxd:B
2 3uz5:A 247 246 0.9028 0.9028 0.9065 1.45e-158 3uz5:B, 3uzj:A, 3uzj:B
3 4a2r:A 247 246 0.8866 0.8866 0.8902 1.07e-149 5an7:A, 4pa8:A, 8xyn:A, 8xyn:B
4 3t44:A 259 197 0.2672 0.2548 0.3350 2.85e-30 3t40:A, 3t55:A, 3t78:A
5 1vc4:B 254 226 0.3360 0.3268 0.3673 6.76e-29
6 7etx:A 472 188 0.2591 0.1356 0.3404 1.49e-23 7ety:A, 7ety:B
7 1pii:A 452 226 0.2794 0.1527 0.3053 2.25e-23 1jcm:P
8 6y88:B 265 207 0.2591 0.2415 0.3092 1.22e-21 6y88:A, 6y88:C, 6y88:D, 6y88:E, 6y88:F, 6y88:G, 6y88:H
9 8j22:C 285 71 0.0729 0.0632 0.2535 0.11 8t3s:R
10 7kkd:B 306 59 0.0729 0.0588 0.3051 0.37 5f1u:A, 5f1u:B, 5f1u:C, 5f1u:D, 5f1v:A, 5f1v:C, 5f1v:B, 5f1v:D, 7kg2:A, 7kg2:C, 7kg2:B, 7kg2:D, 7kg2:E, 7kg2:F, 7kg5:A, 7kg5:B, 7kg5:C, 7kg5:E, 7kg5:F, 7kg9:A, 7kg9:E, 7kg9:B, 7kg9:C, 7kg9:D, 7kg9:F, 7kh4:A, 7kh4:F, 7kh4:B, 7kh4:C, 7kh4:D, 7kh4:E, 7kk1:A, 7kk1:B, 7kk1:C, 7kk1:D, 7kk1:E, 7kk1:F, 7kkd:A, 7kkd:F, 7kkd:E, 7kkd:C, 7kkd:D, 7kkg:A, 7kkg:D, 7kkg:B, 7kkg:E, 7kkg:C, 7kkg:F, 7kkt:A, 7kkt:F, 7kkt:B, 7kkt:E, 7kkt:C, 7kkt:D, 7kls:A, 7kls:F, 7kls:B, 7kls:C, 7kls:D, 7kls:E, 7klt:A, 7klt:C, 7klt:E, 7klt:F, 7kly:A, 7kly:D, 7kly:B, 7kly:C, 7kly:E, 7kly:F, 7km0:B, 7km0:C, 7km0:A, 7km0:D, 7km0:E, 7km0:F, 7km1:A, 7km1:B, 7km1:C, 7km1:D, 7km1:E, 7km1:F, 7kn9:A, 7kn9:B, 7kn9:C, 7kn9:D, 7kn9:E, 7kn9:F, 7knz:B, 7knz:C, 7knz:A, 7knz:D, 7knz:E, 7knz:F, 7ko3:A, 7ko3:B, 7ko3:C, 7ko3:D, 7ko3:E, 7ko3:F, 7kpc:A, 7kpc:B, 7kpc:C, 7kpc:D, 7kpc:E, 7kpc:F, 7kpe:B, 7kpe:C, 7kpe:A, 7kpe:D, 7kpe:E, 7kpe:F, 7kr7:A, 7kr7:E, 7kr7:B, 7kr7:C, 7kr7:D, 7kr7:F, 7kr8:B, 7kr8:D, 7kto:A, 7kto:B, 7kto:C, 7kto:D, 7kto:E, 7kto:F, 7ku6:D, 7kuz:A, 7kuz:F, 7kuz:B, 7kuz:C, 7kuz:D, 7kuz:E, 7kwf:B, 7kwf:F, 7kwf:A, 7kwf:C, 7kwf:D, 7kwf:E, 7kwn:B, 7kwp:A, 7kwp:B, 7kwp:C, 7kwp:D, 7kwp:E, 7kwp:F, 7kx1:A, 7kxg:A, 7kxg:C, 7kxg:B, 7kxg:D, 7kxg:E, 7kxg:F, 7kxh:A, 7kxh:D, 7kxh:B, 7kxh:C, 7kxh:E, 7kxh:F, 7kz2:A, 7kz2:D, 7kz2:B, 7kz2:C, 7kz2:E, 7kz2:F, 7lcf:A, 7lcf:B, 7lcf:F, 7lcf:C, 7lcf:D, 7lcf:I, 7lcf:E, 7lcf:G, 7lcf:H, 7lcf:J, 7lcf:K, 7lcf:L, 7m06:B, 7m06:C, 7m06:D, 4m19:A, 4m19:B, 4m19:C, 4m19:D, 4mlr:A, 4mlr:D, 4mlr:C, 4mlr:E, 4mlr:F, 4mlr:G, 4mlr:H, 6u01:B
11 8u7j:L 267 92 0.1093 0.1011 0.2935 0.94 8u7j:K, 8u7j:I, 8u9e:B
12 3meq:A 341 33 0.0526 0.0381 0.3939 2.0 3meq:B, 3meq:C, 3meq:D
13 1h5y:B 253 102 0.1134 0.1107 0.2745 2.3 1h5y:A
14 7r81:s1 149 37 0.0607 0.1007 0.4054 2.8
15 7bor:A 247 60 0.0769 0.0769 0.3167 3.0 7bor:C
16 4ml9:A 276 155 0.1538 0.1377 0.2452 3.7 4ml9:B
17 4jej:A 241 32 0.0607 0.0622 0.4688 4.0
18 2i1o:A 389 31 0.0445 0.0283 0.3548 4.1 1yte:A, 1ytk:A
19 4tuw:A 71 52 0.0688 0.2394 0.3269 4.3 4tuw:B, 4tux:B, 4tux:A
20 6erc:A 511 132 0.1255 0.0607 0.2348 5.1 6erc:B
21 7zlq:B 82 34 0.0486 0.1463 0.3529 5.5 7zlq:A
22 3s2e:A 340 40 0.0567 0.0412 0.3500 5.6 3s1l:A, 3s1l:B, 3s1l:C, 3s1l:D, 3s2e:B, 3s2e:C, 3s2e:D, 3s2e:E, 3s2e:F, 3s2e:G, 3s2e:H, 3s2f:A, 3s2f:B, 3s2f:C, 3s2f:D, 3s2f:E, 3s2f:F, 3s2f:G, 3s2f:H, 3s2g:A, 3s2g:B, 3s2g:C, 3s2g:D, 3s2g:E, 3s2g:F, 3s2g:G, 3s2g:H, 3s2i:A, 3s2i:B, 3s2i:C, 3s2i:D, 3s2i:E, 3s2i:F, 3s2i:G, 3s2i:H
23 5uwu:C 998 57 0.0648 0.0160 0.2807 5.7 6a38:C, 6a3a:C, 6a3b:C, 6a3c:C, 6a3e:C, 6cit:C, 7cnd:C, 5dh9:C, 5dha:C, 5dhf:C, 5di9:C, 5dif:C, 8hq3:C, 8hq4:C, 8hq5:C, 8hq6:C, 8huf:C, 8hug:C, 8itv:C, 6kft:C, 6m60:C, 6m6x:C, 5uwj:C, 5uwo:C, 5uwp:C, 5uws:C, 6x2p:C, 6x2r:C, 6x2s:C, 6x2u:C, 6x2v:C, 6x2w:C, 6x2x:C, 6x2y:C, 7ypz:C
24 4gpt:C 1017 57 0.0648 0.0157 0.2807 6.3 4gmx:C, 4hat:C, 4hau:C, 4hav:C, 4haw:C, 4hax:C, 4hay:C, 4haz:C, 4hb0:C, 4hb4:C, 5jlj:C, 7l5e:C, 6lq9:C, 5uwh:C, 5uwi:C, 5uwq:C, 5uwr:C, 5uwt:C, 5uww:C, 4wvf:C, 3wyg:C, 6xjp:C, 6xjr:C, 6xjs:C, 6xjt:C, 6xju:C, 5xoj:C, 5ysu:C, 5zpu:C
25 2jh8:A 613 39 0.0567 0.0228 0.3590 7.3 2jh9:A, 2jha:A, 2jhp:A
26 3k5n:A 759 59 0.0648 0.0211 0.2712 7.3
27 3k57:A 782 59 0.0648 0.0205 0.2712 7.4 3k58:A, 3k59:A, 3k5l:A, 3k5m:A, 3maq:A
28 8jd6:R 774 55 0.0810 0.0258 0.3636 9.3 7e9h:R, 7e9h:S, 8jd4:4, 8jd5:4, 8jd6:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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