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BioLiP
>protein
PRTVMVNLNIHNRNSSDYYNRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEILVLRREPPH
CPNSFRLEKILVSVGCTCVTPI

The query sequence (length=102) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vb9:A 108 102 0.9510 0.8981 0.9510 2.35e-67 7ama:A, 7ama:B, 7amg:A, 7amg:B, 7amg:C, 7amg:D, 8cdg:A, 8cdg:B, 8dyf:A, 8dyf:B, 8dyg:A, 8dyg:B, 8dyh:A, 8dyh:B, 8dyi:A, 8dyi:B, 5hhv:A, 5hhx:A, 5hi3:A, 5hi3:B, 5hi4:A, 5hi4:B, 5hi5:A, 5hi5:B, 8usr:A, 8usr:B, 8usr:D, 5vb9:B
2 8uss:A 107 108 0.9314 0.8879 0.8796 7.39e-62
3 3jvf:B 104 98 0.5490 0.5385 0.5714 7.30e-35
4 5by6:B 288 73 0.2157 0.0764 0.3014 1.3 5by6:A, 5by6:C, 5by6:D, 5m4z:A, 5m4z:B
5 8opp:A 670 45 0.1275 0.0194 0.2889 2.2
6 8opt:A 783 45 0.1275 0.0166 0.2889 2.2 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
7 8c8v:A 1032 29 0.0980 0.0097 0.3448 2.5 8c8u:A, 8c8w:A, 8c9d:A
8 8htu:H 95 16 0.0784 0.0842 0.5000 3.6 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
9 6z1p:AR 274 55 0.1667 0.0620 0.3091 3.9
10 8jjm:A 484 43 0.1373 0.0289 0.3256 6.0 8jjm:B
11 4pu5:A 438 20 0.0882 0.0205 0.4500 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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