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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PRTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAAAGHQAEAILEEIMTKYKGNYILAVEGNPPLNQD
GMSCIIGGRPFIEQLKYVAKDAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPIIKVPGCPPIAEVMTGVITYML
TFDRIPELDRQGRPKMFYSQRIHDKCYRRPHFDAGQFVEEWDDESARKGFCLYKMGCKGPTTYNACSTTRWNEGTSFPIQ
SGHGCIGCSEDGFWDKGSFYDRLT

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ayx:B 273 267 0.9242 0.8938 0.9139 0.0 3ayx:D, 3ayz:B, 3ayz:D, 5d51:S, 4iub:S, 4iuc:S, 4iud:S, 5mdj:S, 5mdk:S, 5mdl:S, 7odg:S, 7odh:S, 8pou:S, 8pov:S, 8pow:S, 8pox:S, 8poz:S, 3rgw:S, 4ttt:S, 5y34:B, 5y34:D
2 4c3o:B 263 262 0.8144 0.8175 0.8206 2.35e-164 4c3o:D, 4c3o:F
3 4gd3:S 304 264 0.7652 0.6645 0.7652 9.89e-159 5a4f:S, 5a4f:T, 5a4i:S, 5a4i:T, 5a4m:S, 5a4m:T, 5adu:S, 5adu:T, 6fpi:S, 6fpi:T, 6fpo:S, 6fpo:T, 6fpw:S, 6fpw:T, 6g7r:S, 6g7r:T, 6g94:S, 6g94:T, 6g94:Q, 6g94:R, 6gal:S, 6gal:T, 4gd3:T, 4gd3:Q, 4gd3:R, 5jrd:S, 5jrd:T, 5lmm:S, 5lmm:T, 5lry:S, 5lry:T, 6rp2:S, 6rp2:T, 4ue3:SSS, 4ue3:TTT, 3uqy:S, 3uqy:T, 3usc:S, 3usc:T, 3use:S, 3use:T
4 3myr:C 269 265 0.4962 0.4870 0.4943 4.56e-89 3myr:A, 3myr:E, 3myr:G
5 1frv:A 262 256 0.4205 0.4237 0.4336 8.20e-75 1frv:C, 2frv:S, 2frv:A, 2frv:C, 2frv:E, 2frv:G, 2frv:I, 1yq9:A, 1yq9:B
6 4urh:C 264 262 0.4621 0.4621 0.4656 1.31e-71 3cur:A, 3cur:B, 3cur:C, 3cus:A, 3cus:B, 3cus:C, 1frf:S, 3h3x:A, 3h3x:B, 3h3x:C, 4ucq:A, 4ucq:B, 4ucq:C, 4ucw:A, 4ucw:B, 4ucw:C, 4ucx:A, 4ucx:B, 4ucx:C, 4ud2:A, 4ud2:B, 4ud2:C, 4ud6:A, 4ud6:B, 4ud6:C, 4ue2:A, 4ue2:B, 4ue2:C, 4ue6:A, 4ue6:B, 4ue6:C, 4ueq:A, 4ueq:B, 4ueq:C, 4ueq:D, 4ueq:E, 4ueq:F, 4uew:A, 4uew:B, 4uew:C, 4upe:A, 4upe:B, 4upe:C, 4upv:A, 4upv:B, 4uql:A, 4uql:B, 4uqp:A, 4uqp:B, 4urh:A, 4urh:B, 1yqw:A, 1yqw:B, 1yqw:C, 1yrq:A, 1yrq:B, 1yrq:C, 1yrq:D, 1yrq:F, 1yrq:G
7 1h2a:S 267 258 0.4318 0.4270 0.4419 8.57e-70 1h2r:S, 4u9h:S, 4u9i:S, 1ubh:S, 1ubj:S, 1ubk:S, 1ubl:S, 1ubm:S, 1ubo:S, 1ubr:S, 1ubt:S, 1ubu:S, 8w6x:S, 1wuh:S, 1wui:S, 1wuj:S, 1wuk:S, 1wul:S, 5xle:S, 5xlf:S, 5xlg:S, 5xlh:S, 5y4n:S
8 5xvd:S 269 253 0.4280 0.4201 0.4466 3.36e-69 6ehq:S, 6ehq:T, 6ehs:S, 6ehs:T, 6en9:S, 6en9:T, 6g7m:S, 6g7m:T, 6gam:S, 6gam:T, 6gan:S, 6gan:T, 7nem:S, 7nem:T, 6syo:SSS, 6syo:TTT, 6syx:SSS, 6syx:TTT, 6szd:SSS, 6szd:TTT, 6szk:SSS, 6szk:TTT, 7vxq:B, 7vxq:D, 5xvb:S, 5xvb:T, 5xvc:S, 5xvc:T, 5xvd:T
9 1e3d:A 262 256 0.4470 0.4504 0.4609 1.68e-68 1e3d:C
10 4kl8:S 279 280 0.3674 0.3477 0.3464 4.08e-51 1cc1:S, 4kl8:T, 4kn9:S, 4kn9:T, 4ko1:S, 4ko1:T, 4ko2:S, 4ko2:T, 4ko3:S, 4ko3:T, 4ko4:S, 4ko4:T
11 5jsh:A 283 282 0.3750 0.3498 0.3511 4.22e-51 5jsk:A, 5jsu:A, 5jsy:A, 5jt1:A, 6rtp:A, 6ru9:A, 6ruc:A, 2wpn:A, 6z7r:A, 6z7r:C, 6z8j:A, 6z8j:C, 6z8m:A, 6z8o:A, 6z8o:C, 6z9g:A, 6z9g:C, 6z9g:E, 6z9g:G, 6z9o:A, 6za1:A, 3ze6:A, 3ze7:A, 3ze8:A, 3ze9:A, 3zea:A
12 8dqv:B 322 268 0.2689 0.2205 0.2649 7.85e-25 8dqv:D, 7utd:B, 7utd:D, 7utd:F, 7utd:H, 7utd:J, 7utd:L, 7utd:N, 7utd:P, 7uur:D, 7uur:G, 7uus:B, 7uus:D, 7uus:F, 7uus:H, 7uus:J, 7uus:L, 7uus:N, 7uus:P
13 5aa5:A 345 279 0.2841 0.2174 0.2688 6.19e-22 5aa5:B, 5aa5:D, 5aa5:F, 5aa5:H, 5aa5:M
14 4omf:G 231 168 0.1515 0.1732 0.2381 8.40e-06 4ci0:B, 3zfs:B
15 6qgr:G 253 115 0.1061 0.1107 0.2435 0.001 6qgt:G, 6qii:G
16 5odc:E 298 203 0.1818 0.1611 0.2365 0.24 5odc:K, 5odh:E, 5odh:K, 5odi:E, 5odi:K, 5odq:E, 5odq:K, 5odr:E, 5odr:K
17 4v6w:CY 131 101 0.1061 0.2137 0.2772 0.29 6xu6:CY, 6xu7:CY, 6xu8:CY
18 7awt:B 141 102 0.1061 0.1986 0.2745 0.64
19 7tgh:S7 162 69 0.0909 0.1481 0.3478 0.85 8b6f:AT, 8bqs:AT, 8gym:s7, 8gym:S7, 8gzu:s7, 8gzu:S7
20 6cfw:J 143 73 0.0871 0.1608 0.3151 0.86
21 7aaq:A 487 70 0.0758 0.0411 0.2857 1.5 7aar:A, 6h7d:A
22 3zyy:X 628 67 0.0720 0.0303 0.2836 2.6 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
23 4r5o:A 426 63 0.0795 0.0493 0.3333 3.9
24 6pfo:A 474 143 0.1402 0.0781 0.2587 3.9 5ii0:A, 5ii0:B, 5ii0:C, 6pfo:B, 6pgq:A
25 5hxq:C 227 56 0.0720 0.0837 0.3393 3.9 5hxp:A, 5hxp:C, 5hxq:A, 5hxt:A, 5hxt:B
26 7t2r:E 179 124 0.1023 0.1508 0.2177 4.0 7t2r:J, 7t30:E, 7t30:J
27 7l7b:D 1148 96 0.0833 0.0192 0.2292 4.9
28 7a01:o2 134 95 0.0871 0.1716 0.2421 5.0 8a3d:S, 5aj0:AY, 8b5l:Y, 8b6c:Y, 9bdl:AL26, 9bdn:AL26, 9bdp:AL26, 8bf9:Y, 7bhp:LY, 8bhf:L1, 8bpo:X2, 8btk:BY, 7cpu:LY, 7cpv:LY, 4d5y:Y, 4d67:Y, 6d90:Y, 6d9j:Y, 9f1b:BY, 9f1c:BY, 9f1d:BY, 7f5s:LY, 8fkp:LI, 8fkq:LI, 8fkr:LI, 8fks:LI, 8fkt:LI, 8fku:LI, 8fkv:LI, 8fkw:LI, 8fkx:LI, 8fky:LI, 8fkz:LI, 8fl2:LI, 8fl3:LI, 8fl4:LI, 8fl6:LI, 8fl7:LI, 8fl9:LI, 8fla:LI, 8flb:LI, 8flc:LI, 8fld:LI, 8fle:LI, 8flf:LI, 9fpz:LY, 9fq0:LY, 6frk:Y, 6ftg:Y, 6fti:Y, 6ftj:Y, 8g5y:LY, 8g5z:LY, 8g60:LY, 8g61:LY, 8g6j:LY, 8glp:LY, 6gz3:AY, 6gz4:AY, 6gz5:AY, 6hcf:Y3, 6hcj:Y3, 6hcm:Y3, 6hcq:Y3, 8idt:h, 8idy:h, 8ie3:h, 8ifd:2S, 8ife:2S, 8ine:h, 8inf:h, 8ink:h, 6ip5:2S, 6ip6:2S, 6ip8:2S, 8ipd:h, 8ipx:h, 8ipy:h, 8ir1:h, 8ir3:h, 3j7o:Y, 3j7p:Y, 3j7q:Y, 3j7r:Y, 3j92:Y, 3jag:Y, 3jah:Y, 3jai:Y, 3jaj:Y, 3jan:Y, 8jdj:d, 8jdk:d, 8jdl:d, 8jdm:d, 8k2c:LY, 5lks:LY, 6lqm:h, 6lsr:h, 6lss:h, 7ls1:S2, 7ls2:S2, 6lu8:h, 5lzs:Y, 5lzt:Y, 5lzu:Y, 5lzv:Y, 5lzw:Y, 5lzx:Y, 5lzy:Y, 5lzz:Y, 7mdz:Y, 6mtb:Y, 6mtc:Y, 6mtd:Y, 6mte:Y, 7nfx:Y, 7nwg:Y3, 7nwh:Y, 7nwi:Y, 7o7y:BY, 7o7z:BY, 7o80:BY, 7o81:BY, 7obr:Y, 8ohd:LY, 8oj0:LY, 8oj5:LY, 8oj8:LY, 6ole:Z, 6olf:Z, 6olg:AY, 6oli:Z, 6olz:AY, 6om0:Z, 6om7:Z, 8ony:LY, 7ow7:S, 7oya:Y1, 7oyb:Y1, 7oyc:Y1, 7oyd:Y, 8p2k:BY, 6p5i:AY, 6p5j:AY, 6p5k:AY, 6p5n:AY, 8q7z:BY, 8q87:BY, 8qfd:Y, 7qgg:Z, 8qoi:LY, 7qvp:MY, 7qvp:LY, 7qwq:Y, 7qwr:Y, 7qws:Y, 6qzp:LY, 6r5q:Y, 6r6g:Y, 6r6p:Y, 6r7q:Y, 8rjb:Y, 8rjc:Y, 8rjd:Y, 8scb:Y, 6sgc:Y2, 6swa:W, 6sxo:LY, 5t2c:S, 6t59:Y3, 7tm3:Y, 7toq:AL26, 7tor:AL26, 7tut:Y, 7ucj:Y, 7uck:Y, 4ug0:LY, 4ujc:BY, 4ujd:AY, 4uje:CY, 4v6x:CY, 6w6l:Z, 6xa1:LY, 7xnx:LY, 7xny:LY, 8xsx:LY, 8xsy:LY, 8xsz:LY, 6y0g:LY, 8y0w:LY, 8y0x:LY, 6y2l:LY, 6y57:LY, 6y6x:LY, 8yoo:LY, 8yop:LY, 6z6l:LY, 6z6m:LY, 6z6n:LY, 7zjw:Lb, 7zjx:Lb, 6zm7:LY, 6zme:LY, 6zmi:LY, 6zmo:LY, 6zvk:o2
29 1kza:1 115 34 0.0455 0.1043 0.3529 5.1 1kza:2, 1kzb:1, 1kzb:2, 1kzc:1, 1kzc:2, 1kzd:1, 1kzd:2, 1kze:1, 1kze:2, 1rdi:1, 1rdi:2, 1rdj:1, 1rdj:2, 1rdk:1, 1rdk:2, 1rdl:1, 1rdl:2, 1rdm:1, 1rdm:2, 1rdn:1, 1rdn:2, 1rdo:1, 1rdo:2
30 6i0d:6 166 86 0.1023 0.1627 0.3140 5.7 4hea:6, 4hea:G, 6i0d:G, 6i1p:6, 6i1p:G, 3i9v:6, 3i9v:F, 3ias:6, 3ias:F, 3ias:O, 3ias:X, 3m9s:6, 3m9s:F, 6q8o:6, 6q8o:G, 6q8w:6, 6q8w:G, 6q8x:6, 6q8x:G, 6y11:6, 6y11:G, 6ziy:6, 6zjl:6, 6zjn:6, 6zjy:6
31 7d3v:B 199 78 0.0795 0.1055 0.2692 5.9 7d3v:A, 7d3w:A, 7d3x:A, 8fii:B, 8fii:A, 8fij:A, 8fij:B, 8fik:A, 8fik:B, 8fil:A, 8fil:B, 8fim:B, 8fim:A, 5keg:A, 2m65:A, 5sww:A, 5sww:B, 5sww:C, 5sww:D, 5td5:A, 4xxo:A, 4xxo:B
32 2fug:6 144 77 0.0909 0.1667 0.3117 6.5 2fug:F, 2fug:O, 2fug:X, 3iam:6, 3iam:F, 2ybb:6
33 7ksf:A 742 81 0.0833 0.0296 0.2716 6.7
34 5nd5:A 669 119 0.1098 0.0433 0.2437 7.1 5nd5:B
35 5xf9:C 178 33 0.0455 0.0674 0.3636 9.3 5xf9:G, 5xfa:C, 5xfa:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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