Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKILVRE
NTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMM
NNPLLPAHGKGVLVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMV
WFEDDQISAELVQMRLLAPEQWGMPLPLWRRIPEPMRLL

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ybb:F 280 279 0.9964 0.9929 0.9964 0.0 6tj0:A, 6tj0:B, 6ybb:E
2 6ybu:E 168 167 0.5412 0.8988 0.9042 2.38e-105 6ybu:F, 6ybu:K, 6ybu:L
3 4cej:B 1156 46 0.0609 0.0147 0.3696 0.89 4ceh:B, 4cei:B, 3u44:B, 3u4q:B
4 1ei6:A 404 202 0.1649 0.1139 0.2277 2.0 1ei6:B, 1ei6:C, 1ei6:D
5 6fze:A 209 31 0.0394 0.0526 0.3548 5.8 6fxe:A, 6fxe:B, 6fze:B
6 4yu3:B 146 61 0.0717 0.1370 0.3279 6.2 4yu4:B, 4yu4:D
7 8pn5:E 344 59 0.0609 0.0494 0.2881 8.6 8pn3:A, 8pn3:B, 8pn5:A, 8pn5:B, 8pn5:C, 8pn5:H, 8pn5:F, 8pn5:G, 8pn5:D
8 2cb2:A 307 64 0.0681 0.0619 0.2969 9.6 2cb2:B, 2cb2:C, 2cb2:D, 2cb2:E, 2cb2:F, 6qjc:A, 6qjc:B, 6qjc:C, 6qjc:D, 6qka:A, 6qka:B, 6qka:C, 6qka:D, 6qka:E, 6qka:F, 6qkm:A, 6qkm:B, 6qkm:C, 6qkm:D, 6qkm:E, 6qkm:F, 6qne:A, 6qne:B, 6qne:C, 6qne:D, 6qne:E, 6qne:F, 6qo0:A, 6qo0:B, 6qo0:C, 6qo0:D, 7x9w:A, 7x9w:B, 7x9w:C, 7x9w:D, 7x9w:E, 7x9w:F, 7x9w:G, 7x9w:H, 7x9w:I, 7x9w:J, 7x9w:K, 7x9w:L, 7x9w:M, 7x9w:N, 7x9w:O, 7x9w:P, 7x9w:Q, 7x9w:R, 7x9w:S, 7x9w:T, 7x9w:U, 7x9w:V, 7x9w:W, 7x9w:X, 2yav:A, 2yav:B, 2yav:C, 2yav:D, 2yav:E, 2yav:F, 2yaw:A, 2yaw:B, 2yaw:C, 2yaw:D, 2yaw:E, 2yaw:F, 2yax:A, 2yax:B, 2yax:C, 2yax:D, 2yax:E, 2yax:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218