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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PRRTVVLAIDLQAGVTPGCFDEEGVLSRAAALVERARAGGVPVVWVHHDPVGVGTPEWELAAPLHRAEGEPLVRKNYRDS
FADTTLRETLDELGATHLVITGAQSDFAVRTTMQRAAAEGYDVTLVSDAHTTVDTEWEGVRISGEQIVAHTNMYFSGLRY
PGQEFVIATHDHVAL

The query sequence (length=175) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5hwg:A 175 175 1.0000 1.0000 1.0000 3.42e-127 5hwh:A
2 6xjm:D 230 81 0.1714 0.1304 0.3704 1.02e-10 6xjm:A, 6xjm:B, 6xjm:C
3 8cib:D 196 144 0.2629 0.2347 0.3194 1.32e-10 8cib:F
4 6azq:G 226 81 0.1486 0.1150 0.3210 5.04e-09 6azq:H, 6azq:A, 6azq:B, 6azq:C, 6azq:D, 6azq:E, 6azs:B, 6azs:D
5 6xje:B 220 97 0.1600 0.1273 0.2887 1.41e-06 6xj4:B, 6xje:A, 6xje:C, 6xje:D
6 1nba:A 253 148 0.2343 0.1621 0.2770 0.001 1nba:B, 1nba:C, 1nba:D
7 4wgf:A 202 153 0.2114 0.1832 0.2418 0.002 4wgf:E, 4wgf:B, 4wgf:H, 4wgf:C, 4wgf:G, 4wgf:D, 4wgf:F
8 8bkd:F 224 173 0.2114 0.1652 0.2139 0.068 8bkd:C, 8bkd:D, 8bkd:G, 8bkd:H, 8bkd:J, 8bkd:K, 8bkd:L
9 3r2j:B 200 92 0.1429 0.1250 0.2717 0.080 3r2j:A, 3r2j:C, 3r2j:D
10 8urq:B 227 70 0.1314 0.1013 0.3286 0.42
11 3tb4:A 205 129 0.1886 0.1610 0.2558 0.48 3tg2:A
12 2wta:A 212 107 0.1543 0.1274 0.2523 0.60 2wt9:A, 2wt9:B
13 2fq1:A 279 150 0.2057 0.1290 0.2400 0.83
14 2h0r:A 216 72 0.0971 0.0787 0.2361 1.6 2h0r:B, 2h0r:C, 2h0r:D, 2h0r:E, 2h0r:F, 2h0r:G, 3v8e:A, 3v8e:B, 3v8e:C, 3v8e:D, 3v8e:E, 3v8e:F, 3v8e:G
15 1ay0:A 678 30 0.0800 0.0206 0.4667 5.0 1ay0:B, 1gpu:A, 1gpu:B, 1ngs:A, 1ngs:B, 1tka:A, 1tka:B, 1tkb:A, 1tkb:B, 1tkc:A, 1tkc:B, 1trk:A, 1trk:B
16 3o93:A 190 59 0.0971 0.0895 0.2881 5.9 3o90:A, 3o90:B, 3o90:C, 3o90:D, 3o91:A, 3o91:B, 3o91:C, 3o91:D, 3o92:A, 3o92:B, 3o92:C, 3o92:D, 3o93:B, 3o93:C, 3o93:D, 3o94:A, 3o94:B, 3o94:C, 3o94:D
17 4q3v:C 339 80 0.1486 0.0767 0.3250 6.6 4q3p:A, 4q3p:B, 4q3p:C, 4q3p:D, 4q3q:A, 4q3q:B, 4q3q:C, 4q3q:D, 4q3r:A, 4q3r:B, 4q3r:C, 4q3r:D, 4q3s:A, 4q3s:B, 4q3s:C, 4q3s:D, 4q3t:A, 4q3t:B, 4q3t:C, 4q3t:D, 4q3u:A, 4q3u:B, 4q3u:C, 4q3u:D, 4q3v:A, 4q3v:B, 4q3v:D, 4q40:A, 4q40:B, 4q40:C, 4q40:D, 4q41:A, 4q41:B, 4q41:C, 4q41:D, 4q42:A, 4q42:B, 4q42:C, 4q42:D
18 9b8t:A 1146 44 0.0914 0.0140 0.3636 7.8 9b8s:A, 9f6d:A, 9f6e:A, 9f6f:A, 9f6i:A, 9f6j:A, 9f6k:A, 9f6l:A
19 2cu0:A 358 100 0.1486 0.0726 0.2600 8.1 2cu0:B
20 4d9k:A 366 48 0.1029 0.0492 0.3750 8.1 4d9k:B, 4d9k:C
21 1vp8:A 190 87 0.1543 0.1421 0.3103 8.2
22 4d9n:A 391 48 0.1029 0.0460 0.3750 8.5 4d9m:A, 4d9m:B, 4d9n:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218