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BioLiP
>protein
PRIKKFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRR
IDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSC
PSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMMATYKE

The query sequence (length=239) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3sfe:B 240 239 1.0000 0.9958 1.0000 0.0 3abv:B, 3ae1:B, 3ae2:B, 3ae3:B, 3ae4:B, 3ae5:B, 3ae6:B, 3ae7:B, 3ae8:B, 3ae9:B, 3aea:B, 3aeb:B, 3aec:B, 3aed:B, 3aee:B, 3aef:B, 3aeg:B, 7kcm:C, 3sfd:B, 4ytp:B, 4yxd:B, 1zoy:B, 1zp0:B
2 1yq3:B 242 238 0.8996 0.8884 0.9034 2.50e-167 2fbw:B, 2fbw:O, 8gs8:B, 2h88:B, 2h88:O, 2h89:B, 6myo:B, 6myp:B, 6myq:B, 6myr:B, 6mys:B, 6myt:B, 6myu:B, 2wqy:B, 2wqy:O, 1yq4:B
3 4ysx:F 252 237 0.6946 0.6587 0.7004 3.18e-127 5c2t:B, 5c2t:F, 5c3j:B, 5c3j:F, 3vr8:B, 3vr8:F, 3vr9:B, 3vr9:F, 3vra:B, 3vra:F, 3vrb:B, 3vrb:F, 4ysx:B, 4ysy:B, 4ysy:F, 4ysz:B, 4ysz:F, 4yt0:B, 4yt0:F, 4ytm:B, 4ytm:F, 4ytn:B, 4ytn:F
4 8b6g:CB 285 238 0.5146 0.4316 0.5168 2.92e-92 8bqs:CB, 8gym:sb, 8gym:SB, 8gzu:sb, 8gzu:SB
5 2acz:B 238 234 0.5397 0.5420 0.5513 1.01e-86 7jz2:B, 7jz2:F, 7jz2:J, 1nek:B, 1nen:B, 2wdq:B, 2wdq:F, 2wdq:J, 2wdr:B, 2wdr:F, 2wdr:J, 2wdv:B, 2wdv:F, 2wdv:J, 2wp9:B, 2wp9:F, 2wp9:J, 2ws3:B, 2ws3:F, 2ws3:J, 2wu2:B, 2wu2:F, 2wu2:J, 2wu5:B, 2wu5:F, 2wu5:J, 6wu6:B, 6wu6:F, 6wu6:J
6 6lum:K 247 235 0.3766 0.3644 0.3830 3.21e-48 6lum:B, 6lum:Q
7 2b76:B 243 227 0.2929 0.2881 0.3084 5.67e-33 6awf:B, 6awf:F, 2b76:N, 3cir:B, 3cir:N, 1kf6:B, 1kf6:N, 1kfy:B, 1kfy:N, 4kx6:B, 4kx6:N, 1l0v:B, 1l0v:N, 3p4p:B, 3p4p:N, 3p4q:B, 3p4q:N, 3p4r:B, 3p4r:N, 3p4s:B, 3p4s:N, 5vpn:B, 5vpn:F
8 2bs2:B 239 237 0.3138 0.3138 0.3165 2.79e-32 2bs2:E, 2bs3:B, 2bs3:E, 2bs4:B, 2bs4:E, 1e7p:B, 1e7p:E, 1e7p:H, 1e7p:K, 1qlb:B, 1qlb:E
9 5xmj:B 240 240 0.2762 0.2750 0.2750 3.07e-26 5xmj:F, 5xmj:J, 5xmj:N
10 7d6v:B 239 230 0.2678 0.2678 0.2783 5.45e-21 7d6x:B
11 8rbq:C 477 18 0.0502 0.0252 0.6667 0.16 8ahx:C, 8rb8:C, 8rb9:C, 8rbm:C
12 5y6q:A 157 47 0.0544 0.0828 0.2766 0.68
13 7dqx:C 160 55 0.0711 0.1062 0.3091 0.69 7dqx:F
14 7qv7:D 448 100 0.0921 0.0491 0.2200 0.74 7qv7:K, 7qv7:Q, 7qv7:R, 7qv7:V, 7qv7:Z
15 2pae:A 136 51 0.0628 0.1103 0.2941 0.78 2pa7:A, 2pa7:B, 2pae:B, 2pak:A, 2pak:B, 2pam:A, 2pam:B
16 7bkb:C 189 84 0.0921 0.1164 0.2619 1.0 7bkb:c, 7bkc:C, 7bkc:c, 7bkd:C, 7bkd:c, 7bke:C, 7bke:c
17 4hea:9 180 77 0.0962 0.1278 0.2987 1.0 2fug:9, 2fug:G, 2fug:P, 2fug:Y, 4hea:O, 6i0d:9, 6i0d:O, 6i1p:9, 6i1p:O, 3i9v:9, 3i9v:G, 3iam:9, 3iam:G, 3ias:9, 3ias:G, 3ias:P, 3ias:Y, 3m9s:9, 3m9s:G, 6q8o:9, 6q8o:O, 6q8w:9, 6q8w:O, 6q8x:9, 6q8x:O, 6y11:9, 6y11:O, 2ybb:8, 6ziy:9, 6zjl:9, 6zjn:9, 6zjy:9
18 7ane:aa 1514 32 0.0586 0.0092 0.4375 1.1
19 2w2l:A 346 76 0.0753 0.0520 0.2368 1.1 2w2l:B, 2w2l:C, 2w2l:D
20 4i2y:A 381 67 0.0795 0.0499 0.2836 1.2 4i2y:B
21 6icm:D 87 51 0.0544 0.1494 0.2549 1.8
22 6u2m:A 464 103 0.1172 0.0603 0.2718 2.4 8aht:C, 1ak8:A, 3b32:A, 7cqv:E, 5dsu:A, 2i08:A, 1j7o:A, 6jiu:C, 6jiu:F, 6jiu:I, 6jiu:L, 2kug:A, 6pjx:B, 2pq3:A, 4q57:A, 6u2m:C, 3uct:B, 3ucw:C, 3ucy:A
23 3o78:A 402 60 0.0669 0.0398 0.2667 2.6 7aug:A, 3ek4:A, 3ek7:A, 3ek8:A, 3ekh:A, 3evr:A, 3evu:A, 3evv:A, 4ik1:A, 4ik3:A, 4ik4:A, 4ik5:A, 4ik8:A, 4ik9:A, 3o77:A, 3o78:B, 3sg2:A, 3sg3:A, 3sg4:A, 3sg5:A, 3sg6:A, 3sg7:A, 7st4:A, 6tv7:A, 3wlc:A, 3wld:A, 6ya9:A, 6zsm:A, 6zsn:A
24 6hiv:DA 1557 35 0.0669 0.0103 0.4571 3.6 6hiw:DA, 7pub:DA
25 6hiy:DA 1426 35 0.0669 0.0112 0.4571 3.7
26 3ftf:A 246 58 0.0795 0.0772 0.3276 3.8 3fte:A, 3r9x:B
27 3u0k:A 397 65 0.0753 0.0453 0.2769 4.1
28 7aor:aa 1558 28 0.0586 0.0090 0.5000 4.5
29 5odc:C 184 92 0.0921 0.1196 0.2391 4.5 5odc:I, 5odh:C, 5odh:I, 5odi:C, 5odi:I, 5odq:C, 5odq:I, 5odr:C, 5odr:I
30 4rf7:B 700 133 0.1172 0.0400 0.2105 5.3 4rf7:A, 4rf8:A, 4rf8:B, 4rf9:A, 4rf9:B
31 6itx:D 223 58 0.0711 0.0762 0.2931 9.4 6itx:B, 6itx:E, 6itx:F
32 7p8n:a 642 60 0.0711 0.0265 0.2833 10.0 7p5h:A, 7p5h:D, 7p5h:a, 7p5h:d, 7p8n:A, 7p91:a, 7p91:A, 7p92:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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