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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PRGSHMVRRDATTDGLTNLANRKAFDDELDRACAEAEEGGTTICLAVLDIDHFKGFNDTWGHQTGDQVIRYVASVIGRVA
APPRFAARYGGEEFAMIFPREAASVVATTLEEIRVEVSSRMLKRRSTNEDLGAITVSSGFAERKPGESGHSVMERADAAL
YASKRGGRNRVTAAES

The query sequence (length=176) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ttr:B 195 168 0.9432 0.8513 0.9881 1.89e-120 6ttr:A, 6tts:A, 6tts:B
2 5euh:A 164 168 0.4091 0.4390 0.4286 6.51e-31 5euh:B
3 3i5c:B 198 174 0.3466 0.3081 0.3506 3.83e-28 3i5c:A, 1ij0:A, 1ij0:B, 1ij0:C, 1ij1:A, 1ij1:B, 1ij1:C, 3k7z:A, 3k7z:B, 1rb4:A, 1rb4:B, 1swi:C, 6xne:C
4 3bre:B 328 175 0.3523 0.1890 0.3543 4.11e-27 3bre:A
5 3i5a:A 319 171 0.3409 0.1881 0.3509 1.00e-26
6 4zvf:A 164 158 0.3239 0.3476 0.3608 4.99e-26
7 3ign:A 166 165 0.3466 0.3675 0.3697 1.73e-25
8 7e6g:A 264 161 0.3352 0.2235 0.3665 4.05e-25
9 8c05:A 305 178 0.3352 0.1934 0.3315 1.59e-24
10 6zxb:A 293 169 0.2955 0.1775 0.3077 1.66e-24 6zxb:B, 6zxc:A, 6zxc:B, 6zxc:C, 6zxc:D, 6zxm:A, 6zxm:B, 6zxm:C, 6zxm:D, 6zxm:E, 6zxm:F
11 2v0n:A 459 163 0.3352 0.1285 0.3620 9.76e-23 2v0n:B, 1w25:A, 1w25:B, 2wb4:A, 2wb4:B
12 5llw:B 673 163 0.2898 0.0758 0.3129 1.55e-22 5llw:A, 5llx:A, 5llx:B, 5lly:D, 5lly:A, 5lly:C, 5lly:B, 6saw:A, 6saw:B, 6saw:C, 6saw:D, 6saw:E, 6saw:F, 6saw:G, 6saw:H, 6sax:B, 6sax:A
13 6et7:A 646 160 0.2841 0.0774 0.3125 3.04e-22 6et7:B
14 6hbz:B 270 164 0.3295 0.2148 0.3537 3.20e-22 6hbz:A, 6hc0:D, 6hc1:A
15 5euh:D 142 163 0.3580 0.4437 0.3865 3.12e-21 5euh:C
16 4wxw:A 165 165 0.3125 0.3333 0.3333 7.79e-21
17 6d9m:A 326 160 0.3011 0.1626 0.3312 6.95e-18
18 4h54:A 274 162 0.3125 0.2007 0.3395 8.31e-18 4h54:B, 3t9o:A, 3tvk:A
19 5xgd:A 548 170 0.3295 0.1058 0.3412 7.38e-17 8pps:A, 8pps:B, 5xge:A
20 4zmm:A 164 169 0.3523 0.3780 0.3669 2.01e-16 4zmm:B
21 8wcn:A 379 171 0.3068 0.1425 0.3158 2.23e-16 8wcn:B
22 4rnh:A 423 164 0.2841 0.1182 0.3049 4.00e-14
23 4urs:A 162 156 0.2784 0.3025 0.3141 4.02e-14 4urg:A, 4urs:B
24 7a7e:B 176 167 0.2955 0.2955 0.3114 2.40e-12 7a7e:A, 7a7e:C
25 3qyy:B 156 167 0.2898 0.3269 0.3054 3.58e-12 3qyy:A
26 5m3c:B 426 168 0.2670 0.1103 0.2798 5.28e-12 5m3c:A
27 6pwj:A 408 125 0.1591 0.0686 0.2240 0.21 6pwj:B, 6pwk:A, 6pwk:B
28 4lem:C 544 59 0.1023 0.0331 0.3051 0.62 4ihi:A, 4jdc:A, 4lem:A, 4lem:B, 4lem:D, 4lem:F, 4ns3:A, 4ns3:B, 4ns3:C, 4ns3:D, 4ns3:E, 4ns3:F
29 4g0a:A 312 52 0.0795 0.0449 0.2692 0.92 6cy9:A, 4g0a:B, 4g0a:C, 4g0a:D, 2r7p:A, 2r8f:A
30 7etl:A 294 37 0.0795 0.0476 0.3784 3.5 7de0:B, 7de0:A, 7de0:C, 7de0:D, 7etk:A, 7etk:B, 7etl:B, 6oxh:A, 6oxh:B, 6oxj:A, 6oxj:B, 7wsb:A, 7wsb:B, 7wsb:C, 7wsb:D, 7wsb:E, 7wsb:F, 4y5s:A, 4y5s:B, 4y5t:A, 4y5t:B
31 6m6t:C 499 13 0.0568 0.0200 0.7692 4.5 6m6t:A, 6m6t:B, 6m6t:D, 6m6t:E, 6m6t:F, 6m6t:G, 6m6t:H
32 6b2m:A 268 49 0.1023 0.0672 0.3673 8.6 6b2m:B, 6b2m:C, 6b2m:D, 6b2m:E, 6b2m:F, 5udr:A, 5udr:B, 5udr:C, 5udr:D, 5udr:E, 5udr:F, 5uds:A, 5uds:B, 5uds:C, 5uds:D, 5uds:E, 5uds:F, 5udt:A, 5udt:B, 5udt:C, 5udx:D, 5udx:F, 6utp:F
33 8rkq:A 547 61 0.1080 0.0347 0.3115 10.0 4e3x:A, 4e3x:B, 4lh0:A, 4lh0:B, 4lh3:A, 4lh3:B, 7mer:A, 7mer:B, 7mes:A, 7mes:B, 8rkq:D, 8rkr:A, 3v9h:A, 3v9h:B, 3v9h:C, 3v9h:D, 3v9j:A, 3v9j:B, 3v9k:A, 3v9k:B, 3v9l:A, 3v9l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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