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BioLiP
>protein
PRGSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTS

The query sequence (length=51) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1u78:A 103 51 1.0000 0.4951 1.0000 1.13e-32 1tc3:C
2 7r04:A 2326 21 0.2157 0.0047 0.5238 4.6
3 4bed:B 1734 27 0.1569 0.0046 0.2963 4.7 4bed:D, 3qjo:A, 3qjo:B
4 7pgr:N 2423 22 0.2353 0.0050 0.5455 5.8 2d4q:A, 2d4q:B, 2e2x:B, 3p7z:B, 3pg7:B, 7pgq:F, 7pgr:F, 7pgs:F, 7pgt:F, 7pgu:F, 7pgu:N
5 3npc:A 357 41 0.2353 0.0336 0.2927 6.0 3e7o:A, 3e7o:B, 8elc:A, 7n8t:A, 3npc:B
6 7ly7:B 329 20 0.1765 0.0274 0.4500 7.3 7ly4:A, 7ly4:D, 7ly5:B, 7ly6:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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