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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKKEKGKFEDMAKADKARYEREKKKFKDPNAPKRPPSAFF
LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAKQPYEKKAAKLKEKYEKD

The query sequence (length=133) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6cij:N 133 133 1.0000 1.0000 1.0000 2.05e-94 5zdz:N, 5ze1:N, 5ze2:N
2 5ze0:N 118 132 0.8571 0.9661 0.8636 1.60e-71 1ckt:A
3 6cik:N 90 123 0.6617 0.9778 0.7154 2.48e-45 6cg0:N, 6cim:N
4 2gzk:A 159 149 0.6541 0.5472 0.5839 9.82e-39 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
5 4qr9:A 75 70 0.4737 0.8400 0.9000 5.07e-38 4qr9:B
6 4qr9:A 75 66 0.1429 0.2533 0.2879 1.9 4qr9:B
7 1j5n:A 93 68 0.2406 0.3441 0.4706 1.97e-13
8 1j5n:A 93 70 0.1955 0.2796 0.3714 1.75e-07
9 1e7j:A 74 61 0.2030 0.3649 0.4426 3.30e-12 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
10 1e7j:A 74 68 0.1729 0.3108 0.3382 1.66e-04 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
11 5jh0:D 157 117 0.2180 0.1847 0.2479 7.68e-09 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
12 4s2q:D 76 63 0.1504 0.2632 0.3175 3.08e-06 4euw:A
13 4y60:C 76 63 0.1429 0.2500 0.3016 1.64e-05
14 6l6y:D 80 63 0.1278 0.2125 0.2698 3.53e-04 4a3n:A, 3f27:D, 6l6y:F
15 6t78:A 77 63 0.1429 0.2468 0.3016 0.002 6t78:B, 3u2b:C
16 7m5w:A 138 62 0.1579 0.1522 0.3387 0.002 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
17 1gt0:D 79 63 0.1353 0.2278 0.2857 0.008 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
18 6hb4:A 197 39 0.0752 0.0508 0.2564 0.25 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
19 6hb4:A 197 150 0.2481 0.1675 0.2200 0.56 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
20 6qu3:A 464 41 0.1278 0.0366 0.4146 4.3 3f5m:A, 3f5m:B, 3f5m:C, 3f5m:D, 6qu3:B, 6qu3:C, 6qu3:D, 6qu4:A, 6qu4:B, 6qu4:C, 6qu4:D, 6qu5:A, 6qu5:B, 6sy7:A, 6sy7:B, 6sy7:C, 6sy7:D, 6sy7:E, 6sy7:F, 6sy7:G, 6sy7:H
21 8br8:LN 130 49 0.1353 0.1385 0.3673 8.2 8brm:LN, 8bsi:LN, 8bsj:LN, 8btd:LN, 8btr:LN, 8fru:M, 7pwg:M, 7pwo:M2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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