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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PRGIPYFEKYAWLFMRFSGIALVFLALGHLFIMLMWQDGVYRIDFNYVAERWASPFWQIWDMALLWLAMIHGANGMRTII
GDYARKNVTKFWLNSLLLLATGFTLVLGSYVLVTFDANIS

The query sequence (length=120) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6lum:D 146 120 1.0000 0.8219 1.0000 5.79e-85 6lum:H, 6lum:N
2 2bs2:F 254 116 0.2833 0.1339 0.2931 0.25 2bs2:C, 2bs3:F, 2bs3:C, 2bs4:F, 2bs4:C, 1e7p:C, 1e7p:F, 1e7p:I, 1e7p:L, 1qlb:C, 1qlb:F
3 5hdt:A 1085 54 0.1250 0.0138 0.2778 2.4 5hdt:B
4 4kir:A 460 44 0.1000 0.0261 0.2727 7.1 4kir:B, 4kqn:A, 4kqn:B, 1yny:A, 1yny:B
5 3sfw:A 461 46 0.1000 0.0260 0.2609 8.1 3sfw:B
6 6fti:3 120 70 0.1833 0.1833 0.3143 9.2 8pn9:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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