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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PRCGGWVKLNTAPVCFSAKGNRPGSFTPSHHGFLKSVKLRHLRGLVTCQSSTDAHDSYWGCKNRCGFHNYPLNVFVTDKH
NKVMFPKTGATYYLDPYVIKNRFYGVQGYNAMSPELVLQHGCNSPSDYIGPDSQLRVWYGEDLYNTMESDNSGKVCADVF
GYFV

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6a56:A 164 164 1.0000 1.0000 1.0000 4.76e-124 6a56:B
2 7zgh:A 413 53 0.1098 0.0436 0.3396 0.24 7zgh:B
3 4f0p:B 452 23 0.0549 0.0199 0.3913 1.3 4f0p:A, 4f0q:A, 4f0q:B, 4f0q:C, 4r28:C
4 7pkt:m 177 32 0.0610 0.0565 0.3125 1.3
5 8rry:A 170 73 0.1220 0.1176 0.2740 3.3 8rry:B
6 7odf:A 703 98 0.1585 0.0370 0.2653 4.4
7 3wl7:A 336 31 0.0854 0.0417 0.4516 5.7 3wl8:A, 3wwc:A
8 3vsl:A 631 45 0.0915 0.0238 0.3333 7.0 3vsl:B
9 9c4g:r 132 35 0.0732 0.0909 0.3429 8.4 8crx:r, 8cvm:r

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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