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BioLiP
>protein
PQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVS

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3e6z:X 80 75 0.9867 0.9250 0.9867 4.34e-50 2qcp:X, 2vb2:X
2 8c2q:A 100 75 0.5600 0.4200 0.5600 2.10e-24 8bbz:CCC
3 8bwv:B 80 77 0.5600 0.5250 0.5455 2.68e-23 8bwv:A, 8bwv:C, 8bwv:D, 8bwv:E, 8bwv:F
4 3odh:A 194 73 0.2533 0.0979 0.2603 0.28 3odh:B, 3odh:E, 3odh:F
5 6mg0:B 1687 41 0.2000 0.0089 0.3659 0.37
6 6mfz:A 1789 41 0.2000 0.0084 0.3659 0.40 5es7:A, 5es8:A, 5es8:B, 5es9:A, 6mfw:A, 6mfx:A, 6mfy:A, 6mg0:A, 6ulz:A
7 8fmw:AI 148 27 0.1333 0.0676 0.3704 1.6 8fn2:I
8 8ayh:B 951 26 0.1600 0.0126 0.4615 2.7 3frp:A, 3hrz:A, 3hs0:A, 3hs0:F
9 2g42:B 78 32 0.1333 0.1282 0.3125 6.3
10 1oqu:C 302 54 0.1867 0.0464 0.2593 9.8 3dhz:A, 3dhz:B, 1kgn:A, 1kgn:B, 1kgn:C, 1kgn:D, 1kgo:A, 1kgo:B, 1kgo:C, 1kgo:D, 1kgp:A, 1kgp:B, 1kgp:C, 1kgp:D, 3mjo:A, 3mjo:B, 1oqu:A, 1oqu:B, 1oqu:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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