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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PQTPDEASLDLAATDGIRLGDRLRGLWDLRLVGGDAELPGLPREGLQLVLDVAPKGRGLIGYLDTPERLLAAEPPRFRVL
GDLLGASSASIRWRLVDQASGSVAPTHDCSAVFDEVWGDGTLSGRIQRLERSNEDFRFVAVKRHFPLAHERIVLNEKLLG
WLVSPQHRLFHQLWHASRDKWHRLSEKQRNALRGVGWQPGPLDRERDARGPRKDRNASGIDFFFMHRHMLHTARSMQDLP
SWERLPRPVVPLEYDRPGFIRYFDNPDGFSVPPAWVAVDDDEYSEWLHGLKSAEAYHANFLVWESQYQDPAYLAKLTLGQ
FGSELELGMHDWLHMRWASVTTDRFPADFAPRWFRPENDFLGDPFSSHVNPVFWSFHGWIDDRIEDWYRAHERFHPGEVQ
RREVEGIQWFAPGRWVEVGDPWLGPATHGCGLELDVETMKLALRIIFSRPWYARNLKLA

The query sequence (length=459) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rrp:B 450 459 0.9804 1.0000 0.9804 0.0
2 6eyv:A 459 463 0.9673 0.9673 0.9590 0.0 6eyv:B, 6rrp:A, 6rrq:A, 6rrq:B
3 2h7y:A 280 103 0.0610 0.1000 0.2718 0.97 9cgl:A, 9cgl:B, 9cgn:A, 9cgn:B, 2h7x:A, 2h7x:B, 2h7y:B, 2hfj:A, 2hfk:A, 2hfk:B
4 2h0v:A 335 66 0.0392 0.0537 0.2727 1.7 2h0v:B, 8hfb:A, 8hfb:B, 1y3t:A, 1y3t:B
5 6eyu:A 232 51 0.0414 0.0819 0.3725 2.1 6eyu:B, 6eyu:C
6 8asw:C 527 59 0.0458 0.0398 0.3559 2.8 8asv:C, 6qk7:C
7 7k1j:A 3584 27 0.0283 0.0036 0.4815 4.3 7k19:A
8 7k1k:A 3604 27 0.0283 0.0036 0.4815 4.3 7k1b:A
9 7nfc:A 3562 27 0.0283 0.0036 0.4815 4.5 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
10 7k1n:A 3634 27 0.0283 0.0036 0.4815 4.5 7z88:A
11 7wh1:A 499 176 0.0893 0.0822 0.2330 5.0
12 8cli:C 579 56 0.0458 0.0363 0.3750 5.5 8clj:C, 8clj:H
13 2k31:A 149 51 0.0370 0.1141 0.3333 6.9
14 2vqr:A 512 65 0.0566 0.0508 0.4000 7.5
15 3hhs:A 669 48 0.0261 0.0179 0.2500 7.7
16 7ozs:F 571 42 0.0261 0.0210 0.2857 8.0 5aff:A, 4gmn:A
17 7z2u:A 263 80 0.0414 0.0722 0.2375 8.2 7z2u:B, 7z2v:A, 7z2v:B
18 6ow7:P 196 38 0.0283 0.0663 0.3421 8.8 2ai7:A, 2aia:A, 2aie:P, 4eox:P, 1lm6:A, 6ow2:P, 6ow7:Q, 3str:P, 3svj:P, 3sw8:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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