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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PQRLLIPTVDDPGIWGVKVRLGKEKDVVRQILKKKLAREGTKNPLEIYSAFQRDSFKGHVYIEARKAEAINDALKGNVNV
FSNNSKFLVGIVEYKDLLRPVSDVKLTRGSYVRVKNGKFKGDLAQVDEVLENGLEARLKLVPRLDYGKDLSYTSKFRPAQ
RLFSEAEARVHEIRRDRDGFVTYGGEEYYEGFLYKTFRLQNLIVNSINPTLNELSLFEVKVGDTVREFTGERRQGTILHV
YRNFLFLRSREIVENQGVFVTSSNRVGRDPTLNKTVKIRQGGYKGKIGIVKEANGDRFRVELHNPNKTIPIPCSFLLIES
THGWVPYED

The query sequence (length=329) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xon:W 329 329 1.0000 1.0000 1.0000 0.0
2 6ir9:W 275 329 0.8176 0.9782 0.8176 0.0 6j4w:W, 6j4x:W, 6j4y:W, 6j4z:W, 6j50:W, 6j51:W, 8jh2:W, 7wbv:W, 7wbw:W, 7wbx:W
3 7xn7:W 533 360 0.7173 0.4428 0.6556 3.21e-142 7xse:W, 7xsx:W, 7xt7:W, 7xtd:W, 7xti:W
4 7xn7:W 533 114 0.3374 0.2083 0.9737 8.24e-71 7xse:W, 7xsx:W, 7xt7:W, 7xtd:W, 7xti:W
5 8w8e:Z 360 365 0.3161 0.2889 0.2849 5.01e-30 8w8f:Z
6 5oik:Z 488 242 0.2462 0.1660 0.3347 2.88e-29 6gml:Z, 8p4f:Z, 8rbx:Z, 7ycx:j
7 5oik:Z 488 294 0.2401 0.1619 0.2687 4.26e-16 6gml:Z, 8p4f:Z, 8rbx:Z, 7ycx:j
8 7nkx:Z 156 130 0.1581 0.3333 0.4000 2.75e-17
9 7nkx:Z 156 41 0.0760 0.1603 0.6098 1.16e-08
10 2exu:A 192 89 0.1155 0.1979 0.4270 1.39e-13
11 4zn3:A 147 128 0.1094 0.2449 0.2812 7.68e-06
12 4zxh:A 1314 101 0.0881 0.0221 0.2871 0.032 4zxi:A
13 8oki:G 81 63 0.0547 0.2222 0.2857 1.2
14 5mrc:Q 284 44 0.0426 0.0493 0.3182 1.8 3j6b:Q, 5mre:Q, 5mrf:Q
15 3cxm:A 242 36 0.0274 0.0372 0.2500 5.1
16 3t7v:A 337 43 0.0456 0.0445 0.3488 5.7
17 6rm3:LT0 159 45 0.0456 0.0943 0.3333 7.8
18 2pmy:A 73 39 0.0456 0.2055 0.3846 8.6 2pmy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218