Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PQNEYIERHRKLHGRRLDAEERARKKAAREGHKNSENAQNLRGLRAKLYAKQRHAQKIQMRKAIKQHEERNVKGTAKALS
SQIKNKRAEKAARGISEEEMFKVVKTGKKTHKKGWKRIVTKPTFVGPDFTRRPVKYERFIRPMGLRYKKANVTHPTLNVT
VQLPILSVKKNPSNPLYTQLGVLTKGTIIEVNVSDLGIVTASGKIAWGRYAQITNNPENDGCVNAVLLV

The query sequence (length=229) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i9w:CK 238 238 1.0000 0.9622 0.9622 1.50e-167 8i9t:CK, 8i9v:CK, 8i9x:CK, 8i9y:CK, 8i9z:CK, 8ia0:CK, 8pv1:CK, 8pv2:CK, 8pv3:CK, 8pv4:CK, 8pv5:CK, 8pv6:CK, 8pv7:CK, 8pv8:CK, 8pvk:CK, 8pvl:CK
2 7bt6:r 230 234 0.6594 0.6565 0.6453 2.99e-103 7btb:r, 6em1:r, 6ft6:r, 8hfr:xd, 3jct:r, 6m62:r, 7oh3:r, 7ohp:r, 7ohq:r, 7ohs:r, 7oht:r, 7ohu:r, 7ohv:r, 7ohw:r, 7ohy:r, 7r7c:r, 7ug6:r, 7uoo:r, 7uqb:r, 7uqz:r, 7v08:r, 6ylg:r, 6ylh:r, 6ylx:r, 6yly:r, 7z34:r
3 8ir1:J 259 260 0.6725 0.5946 0.5923 2.22e-102 8fl0:NF, 8fl6:NF, 8fl7:NF, 8fl9:NF, 8idy:v, 8ine:s, 8inf:s, 8ir3:J
4 8fl2:NF 233 234 0.6288 0.6180 0.6154 8.31e-101 8fkv:NF, 8fkw:NF, 8fl3:NF, 8fl4:NF, 8ie3:R, 8ink:J, 8ipd:J, 8ipx:J, 8ipy:J
5 6n8j:r 204 229 0.6376 0.7157 0.6376 4.65e-100
6 8v87:r 214 237 0.6419 0.6869 0.6203 3.79e-95 8v84:r
7 8fkx:NF 209 229 0.6114 0.6699 0.6114 1.07e-89 8fkr:NF, 8fks:NF, 8fkt:NF, 8fku:NF, 8fky:NF
8 8fkz:NF 175 229 0.5415 0.7086 0.5415 1.74e-80
9 6elz:r 176 228 0.5415 0.7045 0.5439 3.75e-77 6em5:r, 7nac:r, 7r7a:r, 7u0h:r
10 8v83:r 184 229 0.5546 0.6902 0.5546 8.10e-76
11 8esq:r 166 229 0.5240 0.7229 0.5240 2.80e-70 8esr:r, 8etc:r, 8etg:r, 8eti:r, 8etj:r, 8eup:r, 8euy:r, 8ev3:r
12 7ohr:r 159 228 0.4934 0.7107 0.4956 3.05e-64
13 7of1:r 99 142 0.2795 0.6465 0.4507 7.38e-28
14 8hkx:AS8E 126 85 0.1310 0.2381 0.3529 1.48e-06 8hky:AS8E, 8hkz:AS8E, 8hl1:AS8E, 8hl2:AS8E, 8hl3:AS8E, 8hl4:AS8E, 8hl5:AS8E, 8wkp:AS8E, 8wq2:AS8E, 8wq4:AS8E
15 6skf:Ak 125 67 0.1004 0.1840 0.3433 6.03e-05 6skg:Ak, 6th6:Ak
16 6tmf:K 126 67 0.1048 0.1905 0.3582 6.56e-05
17 5jb3:J 127 64 0.0917 0.1654 0.3281 1.24e-04 5jbh:J, 6sw9:J, 6swc:J, 6swd:J, 4v4n:BJ, 4v6u:AJ, 7zag:J, 7zah:J, 7zai:J, 7zhg:J
18 8p5d:SI0 167 108 0.1485 0.2036 0.3148 0.019 8p60:SI0, 8p60:RI0, 7qca:SI0
19 4bts:A2 207 49 0.0655 0.0725 0.3061 1.2 4bts:B2, 4bts:C2, 4bts:D2, 5jpq:t, 4v5o:A2, 4v5o:B2
20 6e6b:A 633 177 0.1790 0.0648 0.2316 1.6 6e6b:B
21 8kgn:A 1190 61 0.0873 0.0168 0.3279 1.9 8j9v:A, 8j9v:B, 8j9w:B, 8j9w:A, 8j9x:A, 8j9x:B, 8ja1:A, 8ja2:A, 8kgm:A, 8kgm:B, 8kgn:B, 8kgq:A, 8kgq:B, 8kgr:A, 8kgr:B, 8kgs:A, 8kgt:A, 8wwo:A, 8wwo:B, 8wwo:C, 8wwo:D, 8xrf:A, 8xrf:B, 8xrg:A, 8xrh:A, 8xri:A, 8xri:B, 8yge:A, 8yge:B
22 5xxb:F 250 93 0.1266 0.1160 0.3118 5.0
23 5jh8:A 317 38 0.0611 0.0442 0.3684 5.5
24 5wyj:SJ 170 98 0.0961 0.1294 0.2245 6.2 7d4i:SJ, 7d5t:SJ, 7d63:SJ, 6ke6:SJ, 6lqp:SJ, 6lqq:SJ, 6lqr:SJ, 6lqs:SJ, 6lqt:SJ, 6lqu:SJ, 6lqv:SJ, 5wyk:SJ

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218