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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PQNDYIERHIKQHGKRLDHEERKRKREARESHKISERAQKLWKGKQFAKKRYAE

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8v83:r 184 56 1.0000 0.2935 0.9643 1.09e-31
2 7ohr:r 159 56 1.0000 0.3396 0.9643 1.29e-31
3 7of1:r 99 56 1.0000 0.5455 0.9643 2.10e-31
4 6elz:r 176 56 1.0000 0.3068 0.9643 2.66e-31 6em5:r, 7nac:r, 7r7a:r, 7u0h:r
5 6n8j:r 204 56 1.0000 0.2647 0.9643 3.90e-31
6 8v87:r 214 56 1.0000 0.2523 0.9643 4.09e-31 8v84:r
7 7bt6:r 230 56 1.0000 0.2348 0.9643 6.08e-31 7btb:r, 6em1:r, 6ft6:r, 8hfr:xd, 3jct:r, 6m62:r, 7oh3:r, 7ohp:r, 7ohq:r, 7ohs:r, 7oht:r, 7ohu:r, 7ohv:r, 7ohw:r, 7ohy:r, 7r7c:r, 7ug6:r, 7uoo:r, 7uqb:r, 7uqz:r, 7v08:r, 6ylg:r, 6ylh:r, 6ylx:r, 6yly:r, 7z34:r
8 8i9w:CK 238 56 0.6296 0.1429 0.6071 4.07e-14 8i9t:CK, 8i9v:CK, 8i9x:CK, 8i9y:CK, 8i9z:CK, 8ia0:CK, 8pv1:CK, 8pv2:CK, 8pv3:CK, 8pv4:CK, 8pv5:CK, 8pv6:CK, 8pv7:CK, 8pv8:CK, 8pvk:CK, 8pvl:CK
9 8esq:r 166 53 0.5556 0.1807 0.5660 8.83e-12 8esr:r, 8etc:r, 8etg:r, 8eti:r, 8etj:r, 8eup:r, 8euy:r, 8ev3:r
10 8fkz:NF 175 56 0.5370 0.1657 0.5179 1.27e-10
11 8fkx:NF 209 56 0.5370 0.1388 0.5179 2.34e-10 8fkr:NF, 8fks:NF, 8fkt:NF, 8fku:NF, 8fky:NF
12 8fl2:NF 233 56 0.5370 0.1245 0.5179 3.65e-10 8fkv:NF, 8fkw:NF, 8fl3:NF, 8fl4:NF, 8ie3:R, 8ink:J, 8ipd:J, 8ipx:J, 8ipy:J
13 8ir1:J 259 56 0.5370 0.1120 0.5179 4.16e-10 8fl0:NF, 8fl6:NF, 8fl7:NF, 8fl9:NF, 8idy:v, 8ine:s, 8inf:s, 8ir3:J
14 8sun:B 743 35 0.2407 0.0175 0.3714 0.67 8b8k:A, 8b8k:B, 8b8m:A, 6qp6:A, 6qp6:B, 8sur:B, 8tag:B, 8tai:B, 8tal:B
15 5aj4:B1 244 22 0.1667 0.0369 0.4091 6.5 4ce4:1, 6gaw:B1, 6gb2:B1, 7nqh:B1, 7nql:B1, 7nsh:B1, 7nsi:B1, 7nsj:B1, 8oin:BE, 8oiq:BE, 4v19:1, 6ydp:B1, 6ydw:B1
16 2bpe:A 128 37 0.2222 0.0938 0.3243 8.2 2bpe:B, 2bph:A, 2bph:B, 2cl8:A, 2cl8:B
17 8hbf:A 522 34 0.2037 0.0211 0.3235 8.8 7d9r:A, 7d9s:A, 7d9u:A, 8hbh:A, 6jt2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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